GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Methylosinus; Dehalobacter; Sulfurospirillum; Pseudomonas; Nitrosomonas; Dehalococcoides; Shewanella; Mycobacterium; Thauera; Desulfitobacterium; groundwater metagenome; Geobacter

Type:

Genome variation profiling by array; Expression profiling by array

Platform:

GPL13409

33 Samples

Download data: PAIR

(Submitter supplied) A functional microarray targeting 24 genes involved in chlorinated solvent biodegradation pathways has been developed and used to monitor the gene expression in a contaminated site (site B) under ERD (enhanced reductive dechlorination) treatment. The microarray format provided by NimbleGen and used in this study is 12x135K. 4 µg of labelled antisense mRNA from 3 groundwater samples were hybridized on the microarray.

Organism:

Pseudomonas; Nitrosomonas; Dehalococcoides; Methylosinus; Dehalobacter; Sulfurospirillum; Shewanella; Mycobacterium; Thauera; Desulfitobacterium; groundwater metagenome; Geobacter

Type:

Expression profiling by array

Platform:

GPL13409

3 Samples

Download data: PAIR

(Submitter supplied) A functional microarray targeting 24 genes involved in chlorinated solvent biodegradation pathways has been developed and used to monitor the gene diversity present in four trichloroethylene (TCE) contaminated sites under ERD (enhanced reductive dechlorination) treatment. The microarray format provided by NimbleGen and used in this study is 12x135K. 2 µg of labelled gDNA from 30 groundwater samples were hybridized on the microarrays.

Organism:

Shewanella; Pseudomonas; Mycobacterium; Geobacter; groundwater metagenome; Desulfitobacterium; Nitrosomonas; Thauera; Dehalobacter; Sulfurospirillum; Methylosinus; Dehalococcoides

Type:

Genome variation profiling by array

Platform:

GPL13409

30 Samples

Download data: PAIR

(Submitter supplied) Format: 12x135K Each probe on the microarray was synthesized in eight replicates, and a total of 5,707 random probes was used to determine the background noise. Chlorinated solvents metabolic capacities (Environmental). The Platform data table reflects a condensed representation of the expression array's replicate features. The .ndf file is linked below as a supplementary file. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. more...

Organism:

Shewanella; Pseudomonas; Methylosinus; Nitrosomonas; Mycobacterium; Geobacter; Thauera; Desulfitobacterium; Dehalobacter; Sulfurospirillum; Dehalococcoides

3 Series

33 Samples

Download data: NDF