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Items: 4

1.

The effect of genotype and in utero environment on inter-individual variation in neonate DNA methylomes

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Homo sapiens
Type:
SNP genotyping by SNP array; Methylation profiling by genome tiling array
Platforms:
GPL13534 GPL18224
474 Samples
Download data
Series
Accession:
GSE54446
ID:
200054446
2.

The effect of genotype and in utero environment on inter-individual variation in neonate DNA methylomes (methylomes)

(Submitter supplied) We surveyed the genotypes and DNA methylomes of 237 neonates and found 1423 punctate regions of the methylome that were highly variable across individuals, termed variably methylated regions (VMRs), against a backdrop of homogeneity. Although methQTLs were readily detected in neonatal methylomes, genotype alone did not explain the majority of the VMRs. We found that the best explanation for 75% of VMRs was the interaction of genotype with different in utero environments, including maternal smoking, maternal depression, maternal BMI, infant birth weight, gestational age and birth order.
Organism:
Homo sapiens
Type:
Methylation profiling by genome tiling array
Platform:
GPL13534
237 Samples
Download data: TXT
Series
Accession:
GSE53816
ID:
200053816
3.

Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)

(Submitter supplied) 1 difference between HumanMethylation450_15017482_v.1.1.bpm and HumanMethylation450_15017482_v.1.2.bpm: 1.1: 41636384,NEGATIVE,-99,Negative 604 1.2: 41636384,RESTORATION,Green,Restore Protocol: See manufacturer's website
Organism:
Homo sapiens
1672 Series
1 Related Platform
117813 Samples
Download data: BPM, CSV, TXT, XLSX
Platform
Accession:
GPL13534
ID:
100013534
4.

UC Sample 65

Organism:
Homo sapiens
Source name:
Umbilical cord
Platform:
GPL13534
Series:
GSE53816 GSE54446
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Sample
Accession:
GSM1301232
ID:
301301232
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Supplemental Content

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