GSE66438[Accession] - GEO DataSets - NCBI

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Combinatorial DNA methylation codes at repetitive elements

(Submitter supplied) DNA methylation is an essential epigenetic modification, present in both unique DNA sequences and repetitive elements, but its exact function in repetitive elements remains obscure. Here, we describe the genome-wide comparative analysis of the 5mC, 5hmC, 5fC and 5caC profiles of repetitive elements in mouse embryonic fibroblasts and mouse embryonic stem cells. We provide evidence for distinct and highly specific DNA methylation/oxidation patterns of the repetitive elements in both cell types, which mainly affect CA repeats and evolutionary conserved mouse-specific transposable elements including IAP-LTRs, SINEs B1m/B2m and L1Md-LINEs. more...

Organism:: Mus musculus

Type:: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platform:: GPL17021
27 Samples

Download data: WIG

Series

Accession:: GSE66438

ID:: 200066438

PubMed Full text in PMC Similar studies

Select item 1000170212.

Illumina HiSeq 2500 (Mus musculus)

Organism:: Mus musculus

10784 Series
293965 Samples

Platform

Accession:: GPL17021

ID:: 100017021

Select item 3020588773.

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77769

Sample

Accession:: GSM2058877

ID:: 302058877

SRA Run Selector

Select item 3020588764.

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77769

Sample

Accession:: GSM2058876

ID:: 302058876

SRA Run Selector

Select item 3020588755.

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77769

Sample

Accession:: GSM2058875

ID:: 302058875

SRA Run Selector

Select item 3020588746.

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77769

Sample

Accession:: GSM2058874

ID:: 302058874

SRA Run Selector

Select item 3020588737.

5caC_shTDG_rep2

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058873

ID:: 302058873

SRA Run Selector

Select item 3020588728.

5caC_shSCR_rep2

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058872

ID:: 302058872

SRA Run Selector

Select item 3020588719.

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058871

ID:: 302058871

SRA Run Selector

Select item 30205887010.

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058870

ID:: 302058870

SRA Run Selector

Select item 30205886911.

5hmC_shTDG_rep2

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058869

ID:: 302058869

SRA Run Selector

Select item 30205886812.

5hmC_shSCR_rep2

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058868

ID:: 302058868

SRA Run Selector

Select item 30205886713.

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058867

ID:: 302058867

SRA Run Selector

Select item 30205886614.

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058866

ID:: 302058866

SRA Run Selector

Select item 30205886515.

Input_shTDG_rep2

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058865

ID:: 302058865

SRA Run Selector

Select item 30205886416.

Input_shSCR_rep2

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058864

ID:: 302058864

SRA Run Selector

Select item 30205886317.

5caC_shTDG_rep1

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058863

ID:: 302058863

SRA Run Selector

Select item 30205886218.

5caC_shSCR_rep1

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058862

ID:: 302058862

SRA Run Selector

Select item 30205886119.

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058861

ID:: 302058861

SRA Run Selector

Select item 30205886020.

Organism:: Mus musculus

Source name:: Mouse embryonic fibroblasts

Platform:: GPL17021
Series:: GSE66438 GSE77768

Sample

Accession:: GSM2058860

ID:: 302058860

SRA Run Selector

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GSE66438[Accession] (29)
GEO DataSets
disintegrin and metalloproteinase domain-containing protein 2 isoform X3 [Homo s...
disintegrin and metalloproteinase domain-containing protein 2 isoform X3 [Homo sapiens]
gi|2462490113|ref|XP_054184835.1|

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