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Items: 17

1.

H2A.Z marks antisense promoters and has positive effects on antisense transcript levels in budding yeast

(Submitter supplied) The histone variant H2A.Z, which has been reported to have both activating and repressive effects on gene expression, is known to occupy nucleosomes at the 5’ ends of protein-coding genes. We now find that H2A.Z is also significantly enriched in gene coding regions and at the 3’ ends of genes in budding yeast, where it co-localises with histone marks associated with active promoters. By comparing H2A.Z binding to global gene expression in budding yeast strains engineered so that normally unstable transcripts are abundant, we show that H2A.Z is required for normal levels of antisense transcripts as well as sense ones. more...
Organism:
Saccharomyces cerevisiae
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL13821 GPL13272
14 Samples
Download data: WIG
Series
Accession:
GSE54105
ID:
200054105
2.

Illumina HiSeq 2000 (Saccharomyces cerevisiae)

Organism:
Saccharomyces cerevisiae
427 Series
6087 Samples
Download data
Platform
Accession:
GPL13821
ID:
100013821
3.

Illumina Genome Analyzer IIx (Saccharomyces cerevisiae)

Organism:
Saccharomyces cerevisiae
50 Series
302 Samples
Download data
Platform
Accession:
GPL13272
ID:
100013272
4.

RNASeq_htz1-rrp6-del_rep2

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13821
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308208
ID:
301308208
5.

RNASeq_rrp6-del_rep2

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13821
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308206
ID:
301308206
6.

RNASeq_htz1-del_rep2

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13821
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308204
ID:
301308204
7.

RNASeq_WT_rep2

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13821
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308202
ID:
301308202
8.

Input_DNA_ChIP-seq

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13821
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308200
ID:
301308200
9.

H2A.Z_ChIPSeq_rrp6-del_rep2

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13821
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308199
ID:
301308199
10.

H2A.Z_ChIPSeq_rrp6-del_rep1

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13821
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308198
ID:
301308198
11.

RNASeq_htz1-rrp6-del_rep1

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13272
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308207
ID:
301308207
12.

H2A.Z_ChIPSeq_htz1-del

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13821
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308197
ID:
301308197
13.

RNASeq_rrp6-del_rep1

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13272
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308205
ID:
301308205
14.

H2A.Z_ChIPSeq_WT_rep2

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13821
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308196
ID:
301308196
15.

RNASeq_htz1-del_rep1

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13272
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308203
ID:
301308203
16.

H2A.Z_ChIPSeq_WT_rep1

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13821
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308195
ID:
301308195
17.

RNASeq_WT_rep1

Organism:
Saccharomyces cerevisiae
Source name:
Saccharomyces cerevisiae grown in SD medium
Platform:
GPL13272
Series:
GSE54105
Download data: WIG
Sample
Accession:
GSM1308201
ID:
301308201
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Supplemental Content

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