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Items: 1 to 20 of 22

1.

Functional DNA methylation is accompanied by chromatin accessibility [methylation]

(Submitter supplied) Analysis of nucleosome positioning and chromatin state by using CpG methyltransferase M.SssI to methylate nuclei. Unmethylated regions that gain methylation (low to high beta value) are known to be accessible and nucleosome depleted. Method used to study changes after epigenetic drug treatments identified that majority of demethylation events are not accompanied by chromatin accessibility changes.
Organism:
Homo sapiens
Type:
Methylation profiling by array
Platform:
GPL13534
20 Samples
Download data: TXT
Series
Accession:
GSE43851
ID:
200043851

PubMed Full text in PMC Similar studies Analyze with GEO2R

2.

Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)

(Submitter supplied) 1 difference between HumanMethylation450_15017482_v.1.1.bpm and HumanMethylation450_15017482_v.1.2.bpm: 1.1: 41636384,NEGATIVE,-99,Negative 604 1.2: 41636384,RESTORATION,Green,Restore Protocol: See manufacturer's website
Organism:
Homo sapiens
1671 Series
1 Related Platform
117793 Samples
Download data: BPM, CSV, TXT, XLSX
Platform
Accession:
GPL13534
ID:
100013534

3.

786-O_SAHA_SSS1

Organism:
Homo sapiens
Source name:
786-O Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072291
ID:
301072291

4.

786-O_SAHA_NoE

Organism:
Homo sapiens
Source name:
786-O Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072290
ID:
301072290

5.

786-O_AZA_SSS1

Organism:
Homo sapiens
Source name:
786-O Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072289
ID:
301072289

6.

786-O_AZA_NoE

Organism:
Homo sapiens
Source name:
786-O Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072288
ID:
301072288

7.

786-O_SSS1

Organism:
Homo sapiens
Source name:
786-O Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072287
ID:
301072287

8.

786-O_NoE

Organism:
Homo sapiens
Source name:
786-O Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072286
ID:
301072286

9.

MCF7_SAHA_SSS1

Organism:
Homo sapiens
Source name:
MCF7 Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072285
ID:
301072285

10.

MCF7_SAHA_NoE

Organism:
Homo sapiens
Source name:
MCF7 Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072284
ID:
301072284

11.

MCF7_AZA_SSS1

Organism:
Homo sapiens
Source name:
MCF7 Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072283
ID:
301072283

12.

MCF7_AZA_NoE

Organism:
Homo sapiens
Source name:
MCF7 Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072282
ID:
301072282

13.

MCF7_SSS1

Organism:
Homo sapiens
Source name:
MCF7 Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072281
ID:
301072281

14.

MCF7_NoE

Organism:
Homo sapiens
Source name:
MCF7 Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072280
ID:
301072280

15.

DKO1_AZA_SSS1

Organism:
Homo sapiens
Source name:
DKO1 Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072279
ID:
301072279

16.

DKO1_AZA_NoE

Organism:
Homo sapiens
Source name:
DKO1 Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072278
ID:
301072278

17.

DKO1_SSS1_rep1

Organism:
Homo sapiens
Source name:
DKO1 Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072277
ID:
301072277

18.

DKO1_NoE_rep1

Organism:
Homo sapiens
Source name:
DKO1 Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072276
ID:
301072276

19.

HCT116_AZA_SSS1

Organism:
Homo sapiens
Source name:
HCT116 Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072275
ID:
301072275

20.

HCT116_AZA_NoE

Organism:
Homo sapiens
Source name:
HCT116 Cell Line
Platform:
GPL13534
Series:
GSE38858 GSE43851
Download data
Sample
Accession:
GSM1072274
ID:
301072274

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