nsv5872610
- Organism: Homo sapiens
- Study:nstd209 (Almarri et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:66
- Publication(s):Almarri et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 547 SVs from 67 studies. See in: genome view
Overlapping variant regions from other studies: 660 SVs from 65 studies. See in: genome view
Overlapping variant regions from other studies: 79 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5872610 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000001.11 | Chr1 | 148,286,106 | 148,286,171 | ||
| nsv5872610 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000001.10 | Chr1 | 147,758,212 | 147,758,277 |
| nsv5872610 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 5,101,519 | 5,101,584 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17353146 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17353146 | Submitted genomic | NC_000001.11:g.148 286106_148286171de l | GRCh38 (hg38) | NC_000001.11 | Chr1 | 148,286,106 | 148,286,171 | ||
| nssv17353146 | Remapped | Perfect | NW_003871055.3:g.5 101519_5101584del | GRCh37.p13 | First Pass | NW_003871055.3 | Chr1|NW_00 3871055.3 | 5,101,519 | 5,101,584 |
| nssv17353146 | Remapped | Perfect | NC_000001.10:g.147 758212_147758277de l | GRCh37.p13 | Second Pass | NC_000001.10 | Chr1 | 147,758,212 | 147,758,277 |