nsv5332315
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 219 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 219 SVs from 53 studies. See in: genome view
Overlapping variant regions from other studies: 71 SVs from 30 studies. See in: genome view
Overlapping variant regions from other studies: 52 SVs from 23 studies. See in: genome view
Overlapping variant regions from other studies: 75 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 74 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 230 SVs from 55 studies. See in: genome view
Overlapping variant regions from other studies: 230 SVs from 55 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv5332315 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 1,017,190 | 1,017,190 | + |
| nsv5332315 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 1,017,432 | 1,017,432 | + |
| nsv5332315 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_3 | Second Pass | NT_187681.1 | Chr11|NT_1 87681.1 | 86,780 | 86,780 | + |
| nsv5332315 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187656.1 | Chr11|NT_1 87656.1 | 84,962 | 84,962 | + |
| nsv5332315 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_015148966.1 | Chr11|NW_0 15148966.1 | 4,647 | 4,647 | + |
| nsv5332315 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_015148966.1 | Chr11|NW_0 15148966.1 | 4,889 | 4,889 | + |
| nsv5332315 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 1,017,190 | 1,017,190 | + | ||
| nsv5332315 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 1,017,432 | 1,017,432 | + |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16416715 | intrachromosomal translocation | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv16416715 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187681.1 | Chr11|NT_1 87681.1 | 86,780 | 86,780 | + |
| nssv16416715 | Remapped | Perfect | GRCh38.p12 | Second Pass | NT_187656.1 | Chr11|NT_1 87656.1 | 84,962 | 84,962 | + |
| nssv16416715 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_015148966.1 | Chr11|NW_0 15148966.1 | 4,647 | 4,647 | + |
| nssv16416715 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_015148966.1 | Chr11|NW_0 15148966.1 | 4,889 | 4,889 | + |
| nssv16416715 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 1,017,190 | 1,017,190 | + |
| nssv16416715 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 1,017,432 | 1,017,432 | + |
| nssv16416715 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 1,017,190 | 1,017,190 | + | ||
| nssv16416715 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 1,017,432 | 1,017,432 | + |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16416715 | 0.492 | 8288 | 16834 |