nsv5207529
- Organism: Homo sapiens
- Study:nstd204 (Chen et al. 2021)
- Variant Type:mobile element deletion
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:271
- Publication(s):Chen et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 126 SVs from 38 studies. See in: genome view
Overlapping variant regions from other studies: 126 SVs from 38 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5207529 | Submitted genomic | GRCh38.p13 | Primary Assembly | NC_000014.9 | Chr14 | 65,060,440 (-3, +4) | 65,060,710 (-4, +3) | ||
| nsv5207529 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000014.8 | Chr14 | 65,527,158 (-3, +4) | 65,527,428 (-4, +3) |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16755649 | alu deletion | Sequencing | Split read and paired-end mapping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16755649 | Submitted genomic | NC_000014.9:g.(650 60437_65060444)_(6 5060706_65060713)d el | GRCh38.p13 | NC_000014.9 | Chr14 | 65,060,440 (-3, +4) | 65,060,710 (-4, +3) | ||
| nssv16755649 | Remapped | Perfect | NC_000014.8:g.(655 27155_65527162)_(6 5527424_65527431)d el | GRCh37.p13 | First Pass | NC_000014.8 | Chr14 | 65,527,158 (-3, +4) | 65,527,428 (-4, +3) |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) |
|---|---|
| nssv16755649 | 0.052 |