nsv4793062
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:609
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 254 SVs from 39 studies. See in: genome view
Overlapping variant regions from other studies: 19 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 254 SVs from 39 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4793062 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000005.10 | Chr5 | 21,116,800 | 21,117,408 |
| nsv4793062 | Remapped | Perfect | GRCh38.p12 | PATCHES | Second Pass | NW_009646199.1 | Chr5|NW_00 9646199.1 | 18,454 | 19,062 |
| nsv4793062 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000005.9 | Chr5 | 21,116,909 | 21,117,517 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16323625 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16323625 | Remapped | Perfect | NW_009646199.1:g.1 8454_19062del | GRCh38.p12 | Second Pass | NW_009646199.1 | Chr5|NW_00 9646199.1 | 18,454 | 19,062 |
| nssv16323625 | Remapped | Perfect | NC_000005.10:g.211 16800_21117408del | GRCh38.p12 | First Pass | NC_000005.10 | Chr5 | 21,116,800 | 21,117,408 |
| nssv16323625 | Submitted genomic | NC_000005.9:g.2111 6909_21117517del | GRCh37 (hg19) | NC_000005.9 | Chr5 | 21,116,909 | 21,117,517 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16323625 | <0.001 | 1 | 16834 |