nsv4790225
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:447
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 1039 SVs from 70 studies. See in: genome view
Overlapping variant regions from other studies: 643 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 643 SVs from 52 studies. See in: genome view
Overlapping variant regions from other studies: 1039 SVs from 70 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4790225 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000002.12 | Chr2 | 242,050,373 | 242,050,819 |
| nsv4790225 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187647.1 | Chr2|NT_18 7647.1 | 94,083 | 94,529 |
| nsv4790225 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NT_187523.1 | Chr2|NT_18 7523.1 | 94,443 | 94,889 |
| nsv4790225 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000002.11 | Chr2 | 242,992,524 | 242,992,970 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16304567 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv16304567 | Remapped | Perfect | NT_187647.1:g.9408 3_94529del | GRCh38.p12 | Second Pass | NT_187647.1 | Chr2|NT_18 7647.1 | 94,083 | 94,529 |
| nssv16304567 | Remapped | Perfect | NT_187523.1:g.9444 3_94889del | GRCh38.p12 | Second Pass | NT_187523.1 | Chr2|NT_18 7523.1 | 94,443 | 94,889 |
| nssv16304567 | Remapped | Perfect | NC_000002.12:g.242 050373_242050819de l | GRCh38.p12 | First Pass | NC_000002.12 | Chr2 | 242,050,373 | 242,050,819 |
| nssv16304567 | Submitted genomic | NC_000002.11:g.242 992524_242992970de l | GRCh37 (hg19) | NC_000002.11 | Chr2 | 242,992,524 | 242,992,970 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16304567 | <0.001 | 4 | 16824 |