nsv3889882
- Organism: Homo sapiens
- Study:nstd102 (Clinical Structural Variants)
- Variant Type:copy number variation
- Method Type:Multiple
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: Yes
- Region Size:17,211,996
- Description:GRCh37/hg19 1q23.2-25.2(chr1:159815642-177026983)x1 AND not provided
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 38830 SVs from 135 studies. See in: genome view
Overlapping variant regions from other studies: 38826 SVs from 135 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv3889882 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000001.11 | Chr1 | 159,845,852 | 177,057,847 |
| nsv3889882 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000001.10 | Chr1 | 159,815,642 | 177,026,983 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15156891 | copy number loss | Multiple | Multiple | not provided | Pathogenic | ClinVar | RCV000736717.2, VCV000600081.2 | 1 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15156891 | Remapped | Good | NC_000001.11:g.(?_ 159845852)_(177057 847_?)del | GRCh38.p12 | First Pass | NC_000001.11 | Chr1 | 159,845,852 | 177,057,847 |
| nssv15156891 | Submitted genomic | NC_000001.10:g.(?_ 159815642)_(177026 983_?)del | GRCh37 (hg19) | NC_000001.10 | Chr1 | 159,815,642 | 177,026,983 |
No validation data were submitted for this variant
Clinical Assertions
| Variant Call ID | HGVS | Type | Allele Origin | Subject Phenotype | Clinical Interpretation | Source of Interpretation | ClinVar ID | Copy number |
|---|---|---|---|---|---|---|---|---|
| nssv15156891 | GRCh37: NC_000001.10:g.(?_159815642)_(177026983_?)del | copy number loss | unknown | not provided | Pathogenic | ClinVar | RCV000736717.2, VCV000600081.2 | 1 |