nsv1955014
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:4
- Validation:Not tested
- Clinical Assertions: No
- Region Size:13
- Description:MOTIF=[T],NS=[300],REF=[13.0],RL=[13],RPA=[11.
0,12.0,14.0],RU=[T],QUAL=[267016] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 111 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 111 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1955014 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000019.10 | Chr19 | 34,906,577 | 34,906,589 |
| nsv1955014 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000019.9 | Chr19 | 35,397,481 | 35,397,493 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv10677219 | short tandem repeat | (T) 12 | Sequencing | Genotyping |
| nssv10677220 | short tandem repeat | (T) 11 | Sequencing | Genotyping |
| nssv10677221 | short tandem repeat | (T) 14 | Sequencing | Genotyping |
| nssv10677222 | short tandem repeat | (T) 13 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv10677219 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 34,906,577 | 34,906,589 |
| nssv10677220 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 34,906,577 | 34,906,589 |
| nssv10677221 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 34,906,577 | 34,906,589 |
| nssv10677222 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000019.10 | Chr19 | 34,906,577 | 34,906,589 |
| nssv10677219 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 35,397,481 | 35,397,493 | ||
| nssv10677220 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 35,397,481 | 35,397,493 | ||
| nssv10677221 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 35,397,481 | 35,397,493 | ||
| nssv10677222 | Submitted genomic | GRCh37 (hg19) | NC_000019.9 | Chr19 | 35,397,481 | 35,397,493 |