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dbVar

Database of genomic structural variation

nsv1953700

Organism: Homo sapiens

Study:nstd128 (Mallick et al. 2016)
Variant Type:short tandem repeat
Method Type:Sequencing
Submitted on:GRCh37 (hg19)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:17

Description:MOTIF=[TA],NS=[300],REF=[8.5],RL=[17],RPA=[],R
U=[TA],QUAL=[371768]
Publication(s):Mallick et al. 2016

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 108 SVs from 13 studies. See in: genome view

Remapped(Score: Perfect):34,903,299-34,903,315

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv1953700	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000019.10	Chr19	34,903,299	34,903,315
nsv1953700	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000019.9	Chr19	35,394,203	35,394,219

Variant Call Information

Variant Call ID	Type	Repeat Motif	Method	Analysis
nssv10677218	short tandem repeat	(TA) 8.5 (ref)	Sequencing	Genotyping

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv10677218	Remapped	Perfect	GRCh38.p12	First Pass	NC_000019.10	Chr19	34,903,299	34,903,315
nssv10677218	Submitted genomic		GRCh37 (hg19)		NC_000019.9	Chr19	35,394,203	35,394,219

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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