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nstd167 (Wenger et al. 2019)

Organism:
Human
Study Type:
Control Set
Submitter:
Aaron Wenger
Description:
PacBio Circular Consensus Sequencing (CCS) of the human male HG002/NA24385 to evaluate the ability of highly-accurate long-read sequencing to identify small and large variants, to phase variants into haplotypes, and to assemble a genome de novo. See Variant Summary counts for nstd167 in dbVar Variant Summary.
Project:
PRJNA520771
Publication(s):
Wenger et al. 2019

Detailed Information: Download 30218 Variant Regions, Download 30634 Variant Calls, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p13 (hg38)
Submitted: GRCh37.p13 (hg19)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.11Chr12,2202,250RemappedNC_000001.11
NC_000002.12Chr22,1812,205RemappedNC_000002.12
NC_000003.12Chr31,6461,664RemappedNC_000003.12
NC_000004.12Chr41,9231,942RemappedNC_000004.12
NC_000005.10Chr51,6391,653RemappedNC_000005.10
NC_000006.12Chr61,7771,797RemappedNC_000006.12
NC_000007.14Chr71,8241,845RemappedNC_000007.14
NC_000008.11Chr81,4901,508RemappedNC_000008.11
NC_000009.12Chr91,1591,184RemappedNC_000009.12
NC_000010.11Chr101,5571,580RemappedNC_000010.11
NC_000011.10Chr111,3621,393RemappedNC_000011.10
NC_000012.12Chr121,4391,460RemappedNC_000012.12
NC_000013.11Chr131,1361,156RemappedNC_000013.11
NC_000014.9Chr14849862RemappedNC_000014.9
NC_000015.10Chr15747760RemappedNC_000015.10
NC_000016.10Chr161,0341,044RemappedNC_000016.10
NC_000017.11Chr171,0691,087RemappedNC_000017.11
NC_000018.10Chr18864878RemappedNC_000018.10
NC_000019.10Chr19965982RemappedNC_000019.10
NC_000020.11Chr20817835RemappedNC_000020.11
NC_000021.9Chr21584594RemappedNC_000021.9
NC_000022.11Chr22617632RemappedNC_000022.11
NC_000023.11ChrX9961,000RemappedNC_000023.11
NC_000024.10ChrY6161RemappedNC_000024.10
GL000208.1Chr19|GL000208.111RemappedGL000208.1
KI270722.1Chr14|KI270722.111RemappedKI270722.1
GL000214.1Unplaced|GL000214.133RemappedGL000214.1
GL000219.1Unplaced|GL000219.188RemappedGL000219.1
NT_187367.1Chr1|NT_187367.111RemappedNT_187367.1
NT_187514.1Chr1|NT_187514.111RemappedNT_187514.1
NT_187515.1Chr1|NT_187515.12424RemappedNT_187515.1
NT_187516.1Chr1|NT_187516.11212RemappedNT_187516.1
NT_187518.1Chr1|NT_187518.133RemappedNT_187518.1
NT_187519.1Chr1|NT_187519.166RemappedNT_187519.1
NT_187521.1Chr1|NT_187521.111RemappedNT_187521.1
NT_187646.1Chr1|NT_187646.133RemappedNT_187646.1
NW_003315907.2Chr1|NW_003315907.233RemappedNW_003315907.2
NW_009646194.1Chr1|NW_009646194.144RemappedNW_009646194.1
NW_011332687.1Chr1|NW_011332687.156RemappedNW_011332687.1
NW_011332688.1Chr1|NW_011332688.11010RemappedNW_011332688.1
NW_014040925.1Chr1|NW_014040925.111RemappedNW_014040925.1
NW_014040926.1Chr1|NW_014040926.144RemappedNW_014040926.1
NW_014040927.1Chr1|NW_014040927.111RemappedNW_014040927.1
NW_015495298.1Chr1|NW_015495298.111RemappedNW_015495298.1
NW_017852928.1Chr1|NW_017852928.188RemappedNW_017852928.1
NW_018654706.1Chr1|NW_018654706.111RemappedNW_018654706.1
NW_018654707.1Chr1|NW_018654707.111RemappedNW_018654707.1
NW_018654708.1Chr1|NW_018654708.122RemappedNW_018654708.1
NW_019805487.1Chr1|NW_019805487.111RemappedNW_019805487.1
NT_187522.1Chr2|NT_187522.133RemappedNT_187522.1
NT_187523.1Chr2|NT_187523.11919RemappedNT_187523.1
NT_187524.1Chr2|NT_187524.122RemappedNT_187524.1
NT_187525.1Chr2|NT_187525.199RemappedNT_187525.1
NT_187526.1Chr2|NT_187526.155RemappedNT_187526.1
NT_187527.1Chr2|NT_187527.12121RemappedNT_187527.1
NT_187528.1Chr2|NT_187528.155RemappedNT_187528.1
NT_187529.1Chr2|NT_187529.11212RemappedNT_187529.1
NT_187531.1Chr2|NT_187531.111RemappedNT_187531.1
NT_187647.1Chr2|NT_187647.11818RemappedNT_187647.1
NT_187648.1Chr2|NT_187648.111RemappedNT_187648.1
NW_003315908.1Chr2|NW_003315908.111RemappedNW_003315908.1
NW_003315909.1Chr2|NW_003315909.111RemappedNW_003315909.1
NW_011332689.1Chr2|NW_011332689.199RemappedNW_011332689.1
NW_011332690.1Chr2|NW_011332690.166RemappedNW_011332690.1
NW_012132915.1Chr2|NW_012132915.133RemappedNW_012132915.1
NW_015495299.1Chr2|NW_015495299.188RemappedNW_015495299.1
NW_018654710.1Chr2|NW_018654710.111RemappedNW_018654710.1
NT_187678.1Chr3|NT_187678.13030RemappedNT_187678.1
NT_187688.1Chr3|NT_187688.13030RemappedNT_187688.1
NT_187689.1Chr3|NT_187689.13939RemappedNT_187689.1
NT_187690.1Chr3|NT_187690.13232RemappedNT_187690.1
NT_187691.1Chr3|NT_187691.13030RemappedNT_187691.1
NT_187532.1Chr3|NT_187532.13838RemappedNT_187532.1
NT_187533.1Chr3|NT_187533.133RemappedNT_187533.1
NT_187534.1Chr3|NT_187534.133RemappedNT_187534.1
NT_187536.1Chr3|NT_187536.111RemappedNT_187536.1
NT_187537.1Chr3|NT_187537.133RemappedNT_187537.1
NT_187538.1Chr3|NT_187538.122RemappedNT_187538.1
NT_187539.1Chr3|NT_187539.144RemappedNT_187539.1
NT_187649.1Chr3|NT_187649.13131RemappedNT_187649.1
NW_003315913.1Chr3|NW_003315913.111RemappedNW_003315913.1
NW_003871060.2Chr3|NW_003871060.244RemappedNW_003871060.2
NW_009646197.1Chr3|NW_009646197.122RemappedNW_009646197.1
NW_011332691.1Chr3|NW_011332691.122RemappedNW_011332691.1
NW_012132916.1Chr3|NW_012132916.122RemappedNW_012132916.1
NW_017363813.1Chr3|NW_017363813.133RemappedNW_017363813.1
NW_018654711.1Chr3|NW_018654711.133RemappedNW_018654711.1
NW_019805488.1Chr3|NW_019805488.133RemappedNW_019805488.1
NW_019805489.1Chr3|NW_019805489.122RemappedNW_019805489.1
NW_019805490.1Chr3|NW_019805490.122RemappedNW_019805490.1
NW_019805491.1Chr3|NW_019805491.111RemappedNW_019805491.1
NW_019805492.1Chr3|NW_019805492.122RemappedNW_019805492.1
NT_187679.1Chr4|NT_187679.13636RemappedNT_187679.1
NT_187540.1Chr4|NT_187540.133RemappedNT_187540.1
NT_187541.1Chr4|NT_187541.133RemappedNT_187541.1
NT_187542.1Chr4|NT_187542.133RemappedNT_187542.1
NT_187543.1Chr4|NT_187543.11818RemappedNT_187543.1
NT_187544.1Chr4|NT_187544.122RemappedNT_187544.1
NT_187545.1Chr4|NT_187545.199RemappedNT_187545.1
NT_187650.1Chr4|NT_187650.11919RemappedNT_187650.1
NW_003315914.1Chr4|NW_003315914.133RemappedNW_003315914.1
NW_013171799.1Chr4|NW_013171799.111RemappedNW_013171799.1
NW_013171801.1Chr4|NW_013171801.144RemappedNW_013171801.1
NW_017363814.1Chr4|NW_017363814.133RemappedNW_017363814.1
NT_187546.1Chr5|NT_187546.122RemappedNT_187546.1
NT_187547.1Chr5|NT_187547.11010RemappedNT_187547.1
NT_187548.1Chr5|NT_187548.11313RemappedNT_187548.1
NT_187549.1Chr5|NT_187549.122RemappedNT_187549.1
NT_187550.1Chr5|NT_187550.11616RemappedNT_187550.1
NT_187551.1Chr5|NT_187551.122RemappedNT_187551.1
NT_187651.1Chr5|NT_187651.144RemappedNT_187651.1
NT_187652.1Chr5|NT_187652.166RemappedNT_187652.1
NW_003315917.2Chr5|NW_003315917.266RemappedNW_003315917.2
NW_003315919.1Chr5|NW_003315919.122RemappedNW_003315919.1
NW_003315920.1Chr5|NW_003315920.111RemappedNW_003315920.1
NW_016107297.1Chr5|NW_016107297.133RemappedNW_016107297.1
NW_016107298.1Chr5|NW_016107298.11616RemappedNW_016107298.1
NT_187552.1Chr6|NT_187552.155RemappedNT_187552.1
NT_187553.1Chr6|NT_187553.12425RemappedNT_187553.1
NT_187554.1Chr6|NT_187554.122RemappedNT_187554.1
NT_187555.1Chr6|NT_187555.111RemappedNT_187555.1
NT_187556.1Chr6|NT_187556.155RemappedNT_187556.1
NT_187557.1Chr6|NT_187557.144RemappedNT_187557.1
NW_004166862.2Chr6|NW_004166862.22020RemappedNW_004166862.2
NW_009646200.1Chr6|NW_009646200.166RemappedNW_009646200.1
NW_012132918.1Chr6|NW_012132918.133RemappedNW_012132918.1
NW_013171802.1Chr6|NW_013171802.111RemappedNW_013171802.1
NW_013171803.1Chr6|NW_013171803.111RemappedNW_013171803.1
NW_017363815.1Chr6|NW_017363815.111RemappedNW_017363815.1
NW_018654713.1Chr6|NW_018654713.122RemappedNW_018654713.1
NT_187558.1Chr7|NT_187558.11212RemappedNT_187558.1
NT_187559.1Chr7|NT_187559.122RemappedNT_187559.1
NT_187560.1Chr7|NT_187560.13435RemappedNT_187560.1
NT_187561.1Chr7|NT_187561.122RemappedNT_187561.1
NT_187563.1Chr7|NT_187563.199RemappedNT_187563.1
NT_187564.1Chr7|NT_187564.177RemappedNT_187564.1
NW_003315922.2Chr7|NW_003315922.211RemappedNW_003315922.2
NW_012132919.1Chr7|NW_012132919.111RemappedNW_012132919.1
NW_017852929.1Chr7|NW_017852929.133RemappedNW_017852929.1
NW_017852930.1Chr7|NW_017852930.144RemappedNW_017852930.1
NW_018654714.1Chr7|NW_018654714.111RemappedNW_018654714.1
NW_018654715.1Chr7|NW_018654715.122RemappedNW_018654715.1
NW_019805493.1Chr7|NW_019805493.122RemappedNW_019805493.1
NT_187680.1Chr8|NT_187680.11414RemappedNT_187680.1
NT_187565.1Chr8|NT_187565.13131RemappedNT_187565.1
NT_187566.1Chr8|NT_187566.111RemappedNT_187566.1
NT_187567.1Chr8|NT_187567.177RemappedNT_187567.1
NT_187568.1Chr8|NT_187568.12525RemappedNT_187568.1
NT_187569.1Chr8|NT_187569.144RemappedNT_187569.1
NT_187571.1Chr8|NT_187571.189RemappedNT_187571.1
NT_187572.1Chr8|NT_187572.11010RemappedNT_187572.1
NT_187573.1Chr8|NT_187573.11010RemappedNT_187573.1
NT_187574.1Chr8|NT_187574.167RemappedNT_187574.1
NT_187577.1Chr8|NT_187577.133RemappedNT_187577.1
NT_187654.1Chr8|NT_187654.12323RemappedNT_187654.1
NT_187655.1Chr8|NT_187655.11414RemappedNT_187655.1
NW_017852931.1Chr8|NW_017852931.111RemappedNW_017852931.1
NW_017852932.1Chr8|NW_017852932.111RemappedNW_017852932.1
NW_018654716.1Chr8|NW_018654716.11010RemappedNW_018654716.1
NW_018654717.1Chr8|NW_018654717.16264RemappedNW_018654717.1
NW_019805494.1Chr8|NW_019805494.111RemappedNW_019805494.1
NT_187578.1Chr9|NT_187578.122RemappedNT_187578.1
NW_009646201.1Chr9|NW_009646201.156RemappedNW_009646201.1
NW_013171804.1Chr9|NW_013171804.111RemappedNW_013171804.1
NW_013171805.1Chr9|NW_013171805.145RemappedNW_013171805.1
NT_187579.1Chr10|NT_187579.177RemappedNT_187579.1
NW_003315934.1Chr10|NW_003315934.166RemappedNW_003315934.1
NW_003315935.1Chr10|NW_003315935.122RemappedNW_003315935.1
NW_009646202.1Chr10|NW_009646202.111RemappedNW_009646202.1
NW_011332692.1Chr10|NW_011332692.111RemappedNW_011332692.1
NW_013171806.1Chr10|NW_013171806.111RemappedNW_013171806.1
NT_187681.1Chr11|NT_187681.11719RemappedNT_187681.1
NT_187656.1Chr11|NT_187656.1910RemappedNT_187656.1
NT_187657.1Chr11|NT_187657.199RemappedNT_187657.1
NT_187581.1Chr11|NT_187581.155RemappedNT_187581.1
NT_187582.1Chr11|NT_187582.133RemappedNT_187582.1
NT_187584.1Chr11|NT_187584.11616RemappedNT_187584.1
NT_187585.1Chr11|NT_187585.133RemappedNT_187585.1
NT_187586.1Chr11|NT_187586.12122RemappedNT_187586.1
NW_003315936.1Chr11|NW_003315936.123RemappedNW_003315936.1
NW_003871074.1Chr11|NW_003871074.122RemappedNW_003871074.1
NW_013171808.1Chr11|NW_013171808.111RemappedNW_013171808.1
NW_015148966.1Chr11|NW_015148966.11113RemappedNW_015148966.1
NW_019805495.1Chr11|NW_019805495.122RemappedNW_019805495.1
NW_019805496.1Chr11|NW_019805496.145RemappedNW_019805496.1
NW_019805497.1Chr11|NW_019805497.133RemappedNW_019805497.1
NT_187658.1Chr12|NT_187658.199RemappedNT_187658.1
NT_187587.1Chr12|NT_187587.133RemappedNT_187587.1
NT_187588.1Chr12|NT_187588.111RemappedNT_187588.1
NT_187589.1Chr12|NT_187589.122RemappedNT_187589.1
NT_187591.1Chr12|NT_187591.144RemappedNT_187591.1
NW_003315938.1Chr12|NW_003315938.111RemappedNW_003315938.1
NW_003315939.2Chr12|NW_003315939.233RemappedNW_003315939.2
NW_003315940.1Chr12|NW_003315940.155RemappedNW_003315940.1
NW_003315942.2Chr12|NW_003315942.222RemappedNW_003315942.2
NW_003571050.1Chr12|NW_003571050.166RemappedNW_003571050.1
NW_009646204.1Chr12|NW_009646204.111RemappedNW_009646204.1
NW_011332696.1Chr12|NW_011332696.144RemappedNW_011332696.1
NW_011332697.1Chr12|NW_011332697.111RemappedNW_011332697.1
NW_013171809.1Chr12|NW_013171809.177RemappedNW_013171809.1
NW_015148967.1Chr12|NW_015148967.122RemappedNW_015148967.1
NW_018654718.1Chr12|NW_018654718.11414RemappedNW_018654718.1
NW_018654720.1Chr12|NW_018654720.155RemappedNW_018654720.1
NW_019805499.1Chr12|NW_019805499.122RemappedNW_019805499.1
NT_187592.1Chr13|NT_187592.11818RemappedNT_187592.1
NT_187595.1Chr13|NT_187595.144RemappedNT_187595.1
NT_187596.1Chr13|NT_187596.11010RemappedNT_187596.1
NT_187597.1Chr13|NT_187597.111RemappedNT_187597.1
NW_009646205.1Chr13|NW_009646205.111RemappedNW_009646205.1
NW_011332699.1Chr13|NW_011332699.133RemappedNW_011332699.1
NW_011332700.1Chr13|NW_011332700.122RemappedNW_011332700.1
NW_013171810.1Chr13|NW_013171810.122RemappedNW_013171810.1
NW_013171811.1Chr13|NW_013171811.111RemappedNW_013171811.1
NT_187598.1Chr14|NT_187598.177RemappedNT_187598.1
NT_187599.1Chr14|NT_187599.122RemappedNT_187599.1
NT_187601.1Chr14|NT_187601.11818RemappedNT_187601.1
NW_018654721.1Chr14|NW_018654721.122RemappedNW_018654721.1
NW_018654722.1Chr14|NW_018654722.11111RemappedNW_018654722.1
NT_187659.1Chr15|NT_187659.155RemappedNT_187659.1
NT_187660.1Chr15|NT_187660.12022RemappedNT_187660.1
NT_187602.1Chr15|NT_187602.111RemappedNT_187602.1
NT_187604.1Chr15|NT_187604.122RemappedNT_187604.1
NT_187605.1Chr15|NT_187605.122RemappedNT_187605.1
NT_187606.1Chr15|NT_187606.133RemappedNT_187606.1
NW_003315943.1Chr15|NW_003315943.111RemappedNW_003315943.1
NW_003315944.2Chr15|NW_003315944.256RemappedNW_003315944.2
NW_012132920.1Chr15|NW_012132920.111RemappedNW_012132920.1
NT_187607.1Chr16|NT_187607.11718RemappedNT_187607.1
NT_187608.1Chr16|NT_187608.133RemappedNT_187608.1
NT_187610.1Chr16|NT_187610.11111RemappedNT_187610.1
NW_003315945.1Chr16|NW_003315945.111RemappedNW_003315945.1
NW_003315946.1Chr16|NW_003315946.111RemappedNW_003315946.1
NW_012132921.1Chr16|NW_012132921.122RemappedNW_012132921.1
NW_013171812.1Chr16|NW_013171812.122RemappedNW_013171812.1
NW_013171813.1Chr16|NW_013171813.133RemappedNW_013171813.1
NW_017852933.1Chr16|NW_017852933.177RemappedNW_017852933.1
NW_018654723.1Chr16|NW_018654723.111RemappedNW_018654723.1
NW_019805500.1Chr16|NW_019805500.166RemappedNW_019805500.1
NT_187662.1Chr17|NT_187662.12828RemappedNT_187662.1
NT_187663.1Chr17|NT_187663.12525RemappedNT_187663.1
NT_187664.1Chr17|NT_187664.11516RemappedNT_187664.1
NT_167251.2Chr17|NT_167251.211RemappedNT_167251.2
NT_187384.1Chr17|NT_187384.111RemappedNT_187384.1
NT_187611.1Chr17|NT_187611.166RemappedNT_187611.1
NT_187612.1Chr17|NT_187612.12829RemappedNT_187612.1
NT_187613.1Chr17|NT_187613.12830RemappedNT_187613.1
NT_187615.1Chr17|NT_187615.155RemappedNT_187615.1
NT_187616.1Chr17|NT_187616.134RemappedNT_187616.1
NW_003315952.3Chr17|NW_003315952.34849RemappedNW_003315952.3
NW_003315954.1Chr17|NW_003315954.111RemappedNW_003315954.1
NW_003315955.1Chr17|NW_003315955.144RemappedNW_003315955.1
NW_003871091.1Chr17|NW_003871091.11212RemappedNW_003871091.1
NW_017363817.1Chr17|NW_017363817.11919RemappedNW_017363817.1
NW_017363818.1Chr17|NW_017363818.122RemappedNW_017363818.1
NW_017363819.1Chr17|NW_017363819.122RemappedNW_017363819.1
NW_019805501.1Chr17|NW_019805501.134RemappedNW_019805501.1
NT_187665.1Chr18|NT_187665.12121RemappedNT_187665.1
NT_187666.1Chr18|NT_187666.177RemappedNT_187666.1
NT_187617.1Chr18|NT_187617.11819RemappedNT_187617.1
NT_187618.1Chr18|NT_187618.111RemappedNT_187618.1
NW_003315956.1Chr18|NW_003315956.111RemappedNW_003315956.1
NW_003315957.1Chr18|NW_003315957.122RemappedNW_003315957.1
NW_003315958.1Chr18|NW_003315958.11818RemappedNW_003315958.1
NW_003315959.1Chr18|NW_003315959.111RemappedNW_003315959.1
NW_003315961.1Chr18|NW_003315961.199RemappedNW_003315961.1
NW_013171814.1Chr18|NW_013171814.144RemappedNW_013171814.1
NW_014040928.1Chr18|NW_014040928.123RemappedNW_014040928.1
NW_018654724.1Chr18|NW_018654724.123RemappedNW_018654724.1
NW_019805503.1Chr18|NW_019805503.133RemappedNW_019805503.1
NW_003571061.2Chr19|NW_003571061.21818RemappedNW_003571061.2
NW_003571057.2Chr19|NW_003571057.21515RemappedNW_003571057.2
NW_003571058.2Chr19|NW_003571058.21515RemappedNW_003571058.2
NW_003571059.2Chr19|NW_003571059.21515RemappedNW_003571059.2
NW_003571060.1Chr19|NW_003571060.12424RemappedNW_003571060.1
NW_003571056.2Chr19|NW_003571056.21515RemappedNW_003571056.2
NW_003571055.2Chr19|NW_003571055.21919RemappedNW_003571055.2
NT_187619.1Chr19|NT_187619.122RemappedNT_187619.1
NT_187620.1Chr19|NT_187620.111RemappedNT_187620.1
NT_187621.1Chr19|NT_187621.112RemappedNT_187621.1
NT_187622.1Chr19|NT_187622.11314RemappedNT_187622.1
NW_003315962.1Chr19|NW_003315962.199RemappedNW_003315962.1
NW_003315963.1Chr19|NW_003315963.123RemappedNW_003315963.1
NW_003315964.2Chr19|NW_003315964.266RemappedNW_003315964.2
NW_003315965.1Chr19|NW_003315965.133RemappedNW_003315965.1
NW_003571054.1Chr19|NW_003571054.11919RemappedNW_003571054.1
NW_014040929.1Chr19|NW_014040929.199RemappedNW_014040929.1
NT_187623.1Chr20|NT_187623.11313RemappedNT_187623.1
NT_187624.1Chr20|NT_187624.11617RemappedNT_187624.1
NT_187625.1Chr20|NT_187625.155RemappedNT_187625.1
NW_003315966.2Chr20|NW_003315966.222RemappedNW_003315966.2
NT_187626.1Chr21|NT_187626.11010RemappedNT_187626.1
NT_187627.1Chr21|NT_187627.122RemappedNT_187627.1
NT_187628.1Chr21|NT_187628.133RemappedNT_187628.1
NW_003315968.2Chr21|NW_003315968.233RemappedNW_003315968.2
NW_003315969.2Chr21|NW_003315969.211RemappedNW_003315969.2
NW_003315970.2Chr21|NW_003315970.212RemappedNW_003315970.2
NW_015148969.1Chr22|NW_015148969.177RemappedNW_015148969.1
NT_187392.1Chr22|NT_187392.111RemappedNT_187392.1
NT_187629.1Chr22|NT_187629.145RemappedNT_187629.1
NT_187630.1Chr22|NT_187630.111RemappedNT_187630.1
NT_187631.1Chr22|NT_187631.155RemappedNT_187631.1
NT_187632.1Chr22|NT_187632.166RemappedNT_187632.1
NT_187667.1ChrX|NT_187667.14749RemappedNT_187667.1
NW_017363820.1ChrX|NW_017363820.111RemappedNW_017363820.1
NT_187634.1ChrX|NT_187634.14749RemappedNT_187634.1
NT_187635.1ChrX|NT_187635.122RemappedNT_187635.1
NW_018654726.1ChrY|NW_018654726.111RemappedNW_018654726.1
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.10Chr12,2332,263SubmittedNC_000001.10
NC_000002.11Chr22,1942,218SubmittedNC_000002.11
NC_000003.11Chr31,6481,666SubmittedNC_000003.11
NC_000004.11Chr41,9241,943SubmittedNC_000004.11
NC_000005.9Chr51,6401,654SubmittedNC_000005.9
NC_000006.11Chr61,7781,798SubmittedNC_000006.11
NC_000007.13Chr71,8321,853SubmittedNC_000007.13
NC_000008.10Chr81,5051,523SubmittedNC_000008.10
NC_000009.11Chr91,1601,185SubmittedNC_000009.11
NC_000010.10Chr101,5601,583SubmittedNC_000010.10
NC_000011.9Chr111,3661,397SubmittedNC_000011.9
NC_000012.11Chr121,4421,463SubmittedNC_000012.11
NC_000013.10Chr131,1381,158SubmittedNC_000013.10
NC_000014.8Chr14858871SubmittedNC_000014.8
NC_000015.9Chr15749762SubmittedNC_000015.9
NC_000016.9Chr161,0371,047SubmittedNC_000016.9
NC_000017.10Chr171,0831,101SubmittedNC_000017.10
NC_000018.9Chr18864878SubmittedNC_000018.9
NC_000019.9Chr19980997SubmittedNC_000019.9
NC_000020.10Chr20818836SubmittedNC_000020.10
NC_000021.8Chr21584594SubmittedNC_000021.8
NC_000022.10Chr22629644SubmittedNC_000022.10
NC_000023.10ChrX1,0131,017SubmittedNC_000023.10
NC_000024.9ChrY6161SubmittedNC_000024.9
GL000192.1Chr1|GL000192.111SubmittedGL000192.1
GL000193.1Chr4|GL000193.188SubmittedGL000193.1
GL000198.1Chr9|GL000198.111SubmittedGL000198.1
GL000199.1Chr9|GL000199.11010SubmittedGL000199.1
GL000202.1Chr11|GL000202.122SubmittedGL000202.1
GL000212.1Unplaced|GL000212.133SubmittedGL000212.1
GL000216.1Unplaced|GL000216.12121SubmittedGL000216.1
GL000220.1Unplaced|GL000220.155SubmittedGL000220.1
GL000230.1Unplaced|GL000230.122SubmittedGL000230.1
GL000231.1Unplaced|GL000231.111SubmittedGL000231.1
GL000234.1Unplaced|GL000234.111SubmittedGL000234.1
GL000235.1Unplaced|GL000235.111SubmittedGL000235.1
GL000237.1Unplaced|GL000237.133SubmittedGL000237.1
GL000239.1Unplaced|GL000239.111SubmittedGL000239.1
GL000195.1Chr7|GL000195.166SubmittedGL000195.1
GL000205.1Chr17|GL000205.166SubmittedGL000205.1
GL000206.1Chr17|GL000206.111SubmittedGL000206.1
GL000209.1Chr19|GL000209.111SubmittedGL000209.1

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
GL000192.1Chr1|GL000192.1100010100010
GL000202.1Chr11|GL000202.1200010200010
NC_000001.10Chr12,2332,1171186912,2632,146118692
NC_000002.11Chr22,1942,0783281032,2182,102328103
NC_000003.11Chr31,6481,562102831,6661,58010283
NC_000004.11Chr41,9241,851111701,9431,87011170
NC_000005.9Chr51,6401,561001781,6541,57500178
NC_000006.11Chr61,7781,701011751,7981,72001176
NC_000007.13Chr71,8321,732117911,8531,75211792
NC_000008.10Chr81,5051,2601142391,5231,274114243
NC_000009.11Chr91,1601,147001121,1851,17000114
NC_000010.10Chr101,5601,538013181,5831,56101318
NC_000011.9Chr111,3661,279004831,3971,30500488
NC_000012.11Chr121,4421,359313761,4631,38031376
NC_000013.10Chr131,1381,072000661,1581,09200066
NC_000014.8Chr148587760277387178902773
NC_000015.9Chr157497100103876272001041
NC_000016.9Chr161,037976114551,04798511456
NC_000017.10Chr171,0838761431991,101887143206
NC_000018.9Chr188648000006487881100067
NC_000019.9Chr199808930457899790704581
NC_000020.10Chr208187800113683679701137
NC_000021.8Chr215845610002359457000024
NC_000022.10Chr226295970262464461102625
NC_000023.10ChrX1,0139411417501,017943141752
NC_000024.9ChrY6158000361580003
Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
GL000208.1Chr19|GL000208.1110000110000
GL000214.1Unplaced|GL000214.1330000330000
GL000219.1Unplaced|GL000219.1880000880000
GL000230.1Unplaced|GL000230.1210000210000

Samplesets

Number of Samplesets: 1

Sampleset Type:
Control
Size:
1
Organisms:
Homo sapiens
Sampleset Phenotype(s):
None reported
  • Download Samples as CSV file
  • Samples for sampleset 1
    Sample IDSubject ID Subject Phenotype
    SAMN03283347HG002Not reported

    Experimental Details

    Experiment IDTypeMethodAnalysisNumber of Variant Calls
    1DiscoverySequencingde novo and local sequence assembly30,634

    Validations

    No validation data were submitted for this study.

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