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NM_198503.5(KCNT2):c.1884C>T (p.Ser628=) AND not specified

Germline classification:
Likely benign (1 submission)
Last evaluated:
Nov 14, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003479897.1

Allele description [Variation Report for NM_198503.5(KCNT2):c.1884C>T (p.Ser628=)]

NM_198503.5(KCNT2):c.1884C>T (p.Ser628=)

Gene:
KCNT2:potassium sodium-activated channel subfamily T member 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q31.3
Genomic location:
Preferred name:
NM_198503.5(KCNT2):c.1884C>T (p.Ser628=)
HGVS:
  • NC_000001.11:g.196333960G>A
  • NM_001287819.3:c.1884C>T
  • NM_001287820.3:c.1734C>T
  • NM_198503.5:c.1884C>TMANE SELECT
  • NP_001274748.1:p.Ser628=
  • NP_001274749.1:p.Ser578=
  • NP_940905.2:p.Ser628=
  • NC_000001.10:g.196303090G>A
  • NR_146057.2:n.1906C>T
  • NR_146058.2:n.2015C>T
Molecular consequence:
  • NR_146057.2:n.1906C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NR_146058.2:n.2015C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
  • NM_001287819.3:c.1884C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001287820.3:c.1734C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_198503.5:c.1884C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:
AllHighlyPenetrant
Identifiers:
MedGen: CN169374

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV004223851Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Likely benign
(Nov 14, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV004223851.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jan 6, 2024