U.S. flag

An official website of the United States government

NC_000001.10:g.(?_200522516)_(206945780_?)dup AND Epilepsy, familial adult myoclonic, 5

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 29, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV003116306.3

Allele description [Variation Report for NC_000001.10:g.(?_200522516)_(206945780_?)dup]

NC_000001.10:g.(?_200522516)_(206945780_?)dup

Genes:
  • ARL8A:ADP ribosylation factor like GTPase 8A [Gene - OMIM - HGNC]
  • ATP2B4:ATPase plasma membrane Ca2+ transporting 4 [Gene - OMIM - HGNC]
  • BTG2:BTG anti-proliferation factor 2 [Gene - OMIM - HGNC]
  • DDX59:DEAD-box helicase 59 [Gene - OMIM - HGNC]
  • ELF3:E74 like ETS transcription factor 3 [Gene - OMIM - HGNC]
  • ELK4:ETS transcription factor ELK4 [Gene - OMIM - HGNC]
  • GPR25:G protein-coupled receptor 25 [Gene - OMIM - HGNC]
  • GPR37L1:G protein-coupled receptor 37 like 1 [Gene - OMIM - HGNC]
  • IKBKE-AS1:IKBKE antisense RNA 1 [Gene - HGNC]
  • KISS1:KiSS-1 metastasis suppressor [Gene - OMIM - HGNC]
  • LEMD1:LEM domain containing 1 [Gene - OMIM - HGNC]
  • MAPKAPK2:MAPK activated protein kinase 2 [Gene - OMIM - HGNC]
  • MDM4:MDM4 regulator of p53 [Gene - OMIM - HGNC]
  • NUAK2:NUAK family kinase 2 [Gene - OMIM - HGNC]
  • PPFIA4:PTPRF interacting protein alpha 4 [Gene - OMIM - HGNC]
  • RABIF:RAB interacting factor [Gene - OMIM - HGNC]
  • RAB29:RAB29, member RAS oncogene family [Gene - OMIM - HGNC]
  • RBBP5:RB binding protein 5, histone lysine methyltransferase complex subunit [Gene - OMIM - HGNC]
  • RASSF5:Ras association domain family member 5 [Gene - OMIM - HGNC]
  • SRGAP2:SLIT-ROBO Rho GTPase activating protein 2 [Gene - OMIM - HGNC]
  • SOX13:SRY-box transcription factor 13 [Gene - OMIM - HGNC]
  • ASCL5:achaete-scute family bHLH transcription factor 5 [Gene - HGNC]
  • ADORA1:adenosine A1 receptor [Gene - OMIM - HGNC]
  • ADIPOR1:adiponectin receptor 1 [Gene - OMIM - HGNC]
  • AVPR1B:arginine vasopressin receptor 1B [Gene - OMIM - HGNC]
  • RNPEP:arginyl aminopeptidase [Gene - OMIM - HGNC]
  • CACNA1S:calcium voltage-gated channel subunit alpha1 S [Gene - OMIM - HGNC]
  • CAMSAP2:calmodulin regulated spectrin associated protein family member 2 [Gene - OMIM - HGNC]
  • CTSE:cathepsin E [Gene - OMIM - HGNC]
  • CHIT1:chitinase 1 [Gene - OMIM - HGNC]
  • CHI3L1:chitinase 3 like 1 [Gene - OMIM - HGNC]
  • CNTN2:contactin 2 [Gene - OMIM - HGNC]
  • CDK18:cyclin dependent kinase 18 [Gene - OMIM - HGNC]
  • CSRP1:cysteine and glycine rich protein 1 [Gene - OMIM - HGNC]
  • CYB5R1:cytochrome b5 reductase 1 [Gene - OMIM - HGNC]
  • DSTYK:dual serine/threonine and tyrosine protein kinase [Gene - OMIM - HGNC]
  • DYRK3:dual specificity tyrosine phosphorylation regulated kinase 3 [Gene - OMIM - HGNC]
  • ETNK2:ethanolamine kinase 2 [Gene - OMIM - HGNC]
  • EIF2D:eukaryotic translation initiation factor 2D [Gene - OMIM - HGNC]
  • FAM72A:family with sequence similarity 72 member A [Gene - OMIM - HGNC]
  • FMOD:fibromodulin [Gene - OMIM - HGNC]
  • GOLT1A:golgi transport 1A [Gene - OMIM - HGNC]
  • IGFN1:immunoglobulin like and fibronectin type III domain containing 1 [Gene - OMIM - HGNC]
  • IPO9:importin 9 [Gene - HGNC]
  • IKBKE:inhibitor of nuclear factor kappa B kinase subunit epsilon [Gene - OMIM - HGNC]
  • INAVA:innate immunity activator [Gene - OMIM - HGNC]
  • IL10:interleukin 10 [Gene - OMIM - HGNC]
  • KLHDC8A:kelch domain containing 8A [Gene - OMIM - HGNC]
  • KLHL12:kelch like family member 12 [Gene - OMIM - HGNC]
  • KIF14:kinesin family member 14 [Gene - OMIM - HGNC]
  • KIF21B:kinesin family member 21B [Gene - OMIM - HGNC]
  • LAD1:ladinin 1 [Gene - OMIM - HGNC]
  • LMOD1:leiomodin 1 [Gene - OMIM - HGNC]
  • LGR6:leucine rich repeat containing G protein-coupled receptor 6 [Gene - OMIM - HGNC]
  • LRRN2:leucine rich repeat neuronal 2 [Gene - OMIM - HGNC]
  • LAX1:lymphocyte transmembrane adaptor 1 [Gene - OMIM - HGNC]
  • KDM5B:lysine demethylase 5B [Gene - OMIM - HGNC]
  • MFSD4A:major facilitator superfamily domain containing 4A [Gene - OMIM - HGNC]
  • MYOG:myogenin [Gene - OMIM - HGNC]
  • MYBPH:myosin binding protein H [Gene - OMIM - HGNC]
  • NFASC:neurofascin [Gene - OMIM - HGNC]
  • NAV1:neuron navigator 1 [Gene - OMIM - HGNC]
  • NUCKS1:nuclear casein kinase and cyclin dependent kinase substrate 1 [Gene - OMIM - HGNC]
  • OPTC:opticin [Gene - OMIM - HGNC]
  • PM20D1:peptidase M20 domain containing 1 [Gene - OMIM - HGNC]
  • PIK3C2B:phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Gene - OMIM - HGNC]
  • PKP1:plakophilin 1 [Gene - OMIM - HGNC]
  • PLEKHA6:pleckstrin homology domain containing A6 [Gene - OMIM - HGNC]
  • PHLDA3:pleckstrin homology like domain family A member 3 [Gene - OMIM - HGNC]
  • PRELP:proline and arginine rich end leucine rich repeat protein [Gene - OMIM - HGNC]
  • PCAT6:prostate cancer associated transcript 6 [Gene - HGNC]
  • PPP1R12B:protein phosphatase 1 regulatory subunit 12B [Gene - OMIM - HGNC]
  • PPP1R15B:protein phosphatase 1 regulatory subunit 15B [Gene - OMIM - HGNC]
  • PTPN7:protein tyrosine phosphatase non-receptor type 7 [Gene - OMIM - HGNC]
  • RHEX:regulator of hemoglobinization and erythroid cell expansion [Gene - OMIM - HGNC]
  • REN:renin [Gene - OMIM - HGNC]
  • SHISA4:shisa family member 4 [Gene - OMIM - HGNC]
  • SNRPE:small nuclear ribonucleoprotein polypeptide E [Gene - OMIM - HGNC]
  • SLC26A9:solute carrier family 26 member 9 [Gene - OMIM - HGNC]
  • SLC41A1:solute carrier family 41 member 1 [Gene - OMIM - HGNC]
  • SLC45A3:solute carrier family 45 member 3 [Gene - OMIM - HGNC]
  • SYT2:synaptotagmin 2 [Gene - OMIM - HGNC]
  • TIMM17A:translocase of inner mitochondrial membrane 17A [Gene - OMIM - HGNC]
  • TMCC2:transmembrane and coiled-coil domain family 2 [Gene - OMIM - HGNC]
  • TMEM183A:transmembrane protein 183A [Gene - HGNC]
  • TMEM81:transmembrane protein 81 [Gene - HGNC]
  • TMEM9:transmembrane protein 9 [Gene - OMIM - HGNC]
  • TNNI1:troponin I1, slow skeletal type [Gene - OMIM - HGNC]
  • TNNT2:troponin T2, cardiac type [Gene - OMIM - HGNC]
  • UBE2T:ubiquitin conjugating enzyme E2 T [Gene - OMIM - HGNC]
  • ZBED6:zinc finger BED-type containing 6 [Gene - OMIM - HGNC]
  • ZC3H11A:zinc finger CCCH-type containing 11A [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
1q32.1
Genomic location:
Chr1: 200522516 - 206945780 (on Assembly GRCh37)
Preferred name:
NC_000001.10:g.(?_200522516)_(206945780_?)dup
HGVS:
NC_000001.10:g.(?_200522516)_(206945780_?)dup

Condition(s)

Name:
Epilepsy, familial adult myoclonic, 5 (EPEO5)
Synonyms:
CORTICAL MYOCLONIC TREMOR WITH EPILEPSY, FAMILIAL, 5
Identifiers:
MONDO: MONDO:0014167; MedGen: C3809374; Orphanet: 86814; OMIM: 615400

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV003794746Invitae
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Mar 29, 2022)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240-242.

PubMed [citation]
PMID:
28492532
PMCID:
PMC5632818

Details of each submission

From Invitae, SCV003794746.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

A copy number gain of the genomic region encompassing the full coding sequence of the CNTN2 gene has been identified. The boundaries of this event are unknown as they extend beyond the assayed region for this gene and therefore may encompass additional genes. As the precise location of this event is unknown, it may be in tandem or it may be located elsewhere in the genome. This variant has not been reported in the literature in individuals affected with CNTN2-related conditions. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024