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GRCh37/hg19 5q14.3-23.3(chr5:89949118-129317455)x3 AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
May 12, 2017
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000849289.2

Allele description [Variation Report for GRCh37/hg19 5q14.3-23.3(chr5:89949118-129317455)x3]

GRCh37/hg19 5q14.3-23.3(chr5:89949118-129317455)x3

Genes:
  • ADAMTS19:ADAM metallopeptidase with thrombospondin type 1 motif 19 [Gene - OMIM - HGNC]
  • ARL14EPL:ADP ribosylation factor like GTPase 14 effector protein like [Gene - HGNC]
  • APC:APC regulator of WNT signaling pathway [Gene - OMIM - HGNC]
  • ARB2A:ARB2 cotranscriptional regulator A [Gene - HGNC]
  • COMMD10:COMM domain containing 10 [Gene - OMIM - HGNC]
  • DTWD2:DTW domain containing 2 [Gene - HGNC]
  • DMXL1:Dmx like 1 [Gene - OMIM - HGNC]
  • FBXL17:F-box and leucine rich repeat protein 17 [Gene - OMIM - HGNC]
  • FER:FER tyrosine kinase [Gene - OMIM - HGNC]
  • GPR150:G protein-coupled receptor 150 [Gene - HGNC]
  • GRAMD2B:GRAM domain containing 2B [Gene - OMIM - HGNC]
  • KIAA0825:KIAA0825 [Gene - OMIM - HGNC]
  • MCC:MCC regulator of WNT signaling pathway [Gene - OMIM - HGNC]
  • POU5F2:POU domain class 5, transcription factor 2 [Gene - HGNC]
  • PRDM6:PR/SET domain 6 [Gene - OMIM - HGNC]
  • RIOK2:RIO kinase 2 [Gene - OMIM - HGNC]
  • RHOBTB3:Rho related BTB domain containing 3 [Gene - OMIM - HGNC]
  • RFESD:Rieske Fe-S domain containing [Gene - HGNC]
  • SKIC3:SKI3 subunit of superkiller complex [Gene - OMIM - HGNC]
  • SLF1:SMC5-SMC6 complex localization factor 1 [Gene - OMIM - HGNC]
  • ST8SIA4:ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 [Gene - OMIM - HGNC]
  • STARD4:StAR related lipid transfer domain containing 4 [Gene - OMIM - HGNC]
  • TICAM2:TIR domain containing adaptor molecule 2 [Gene - OMIM - HGNC]
  • TMED7-TICAM2:TMED7-TICAM2 readthrough [Gene - HGNC]
  • TNFAIP8:TNF alpha induced protein 8 [Gene - OMIM - HGNC]
  • WDR36:WD repeat domain 36 [Gene - OMIM - HGNC]
  • YTHDC2:YTH N6-methyladenosine RNA binding protein C2 [Gene - OMIM - HGNC]
  • AP3S1:adaptor related protein complex 3 subunit sigma 1 [Gene - OMIM - HGNC]
  • ADGRV1:adhesion G protein-coupled receptor V1 [Gene - OMIM - HGNC]
  • ALDH7A1:aldehyde dehydrogenase 7 family member A1 [Gene - OMIM - HGNC]
  • ARRDC3:arrestin domain containing 3 [Gene - OMIM - HGNC]
  • ARSK:arylsulfatase family member K [Gene - OMIM - HGNC]
  • ATG12:autophagy related 12 [Gene - OMIM - HGNC]
  • CAMK4:calcium/calmodulin dependent protein kinase IV [Gene - OMIM - HGNC]
  • CAST:calpastatin [Gene - OMIM - HGNC]
  • CSNK1G3:casein kinase 1 gamma 3 [Gene - OMIM - HGNC]
  • CEP120:centrosomal protein 120 [Gene - OMIM - HGNC]
  • CHSY3:chondroitin sulfate synthase 3 [Gene - OMIM - HGNC]
  • CHD1:chromodomain helicase DNA binding protein 1 [Gene - OMIM - HGNC]
  • C5orf63:chromosome 5 open reading frame 63 [Gene - HGNC]
  • CCDC112:coiled-coil domain containing 112 [Gene - HGNC]
  • CTXN3:cortexin 3 [Gene - OMIM - HGNC]
  • CDO1:cysteine dioxygenase type 1 [Gene - OMIM - HGNC]
  • DCP2:decapping mRNA 2 [Gene - OMIM - HGNC]
  • PPIP5K2:diphosphoinositol pentakisphosphate kinase 2 [Gene - OMIM - HGNC]
  • ELL2:elongation factor for RNA polymerase II 2 [Gene - OMIM - HGNC]
  • ERAP1:endoplasmic reticulum aminopeptidase 1 [Gene - OMIM - HGNC]
  • ERAP2:endoplasmic reticulum aminopeptidase 2 [Gene - OMIM - HGNC]
  • EFNA5:ephrin A5 [Gene - OMIM - HGNC]
  • EPB41L4A:erythrocyte membrane protein band 4.1 like 4A [Gene - OMIM - HGNC]
  • FAM170A:family with sequence similarity 170 member A [Gene - OMIM - HGNC]
  • FAM174A:family with sequence similarity 174 member A [Gene - HGNC]
  • FAM81B:family with sequence similarity 81 member B [Gene - HGNC]
  • FEM1C:fem-1 homolog C [Gene - OMIM - HGNC]
  • FTMT:ferritin mitochondrial [Gene - OMIM - HGNC]
  • FBN2:fibrillin 2 [Gene - OMIM - HGNC]
  • GLRX:glutaredoxin [Gene - OMIM - HGNC]
  • GIN1:gypsy retrotransposon integrase 1 [Gene - HGNC]
  • HSD17B4:hydroxysteroid 17-beta dehydrogenase 4 [Gene - OMIM - HGNC]
  • ISOC1:isochorismatase domain containing 1 [Gene - HGNC]
  • LVRN:laeverin [Gene - OMIM - HGNC]
  • LMNB1:lamin B1 [Gene - OMIM - HGNC]
  • LNPEP:leucyl and cystinyl aminopeptidase [Gene - OMIM - HGNC]
  • LIX1:limb and CNS expressed 1 [Gene - OMIM - HGNC]
  • LUCAT1:lung cancer associated transcript 1 [Gene - OMIM - HGNC]
  • LOX:lysyl oxidase [Gene - OMIM - HGNC]
  • MACIR:macrophage immunometabolism regulator [Gene - OMIM - HGNC]
  • MAN2A1:mannosidase alpha class 2A member 1 [Gene - OMIM - HGNC]
  • MARCHF3:membrane associated ring-CH-type finger 3 [Gene - OMIM - HGNC]
  • MINAR2:membrane integral NOTCH2 associated receptor 2 [Gene - OMIM - HGNC]
  • MCTP1:multiple C2 and transmembrane domain containing 1 [Gene - OMIM - HGNC]
  • MEGF10:multiple EGF like domains 10 [Gene - OMIM - HGNC]
  • NREP:neuronal regeneration related protein [Gene - OMIM - HGNC]
  • NR2F1:nuclear receptor subfamily 2 group F member 1 [Gene - OMIM - HGNC]
  • NUDT12:nudix hydrolase 12 [Gene - OMIM - HGNC]
  • PAM:peptidylglycine alpha-amidating monooxygenase [Gene - OMIM - HGNC]
  • PPIC:peptidylprolyl isomerase C [Gene - OMIM - HGNC]
  • PHAX:phosphorylated adaptor for RNA export [Gene - OMIM - HGNC]
  • KCNN2:potassium calcium-activated channel subfamily N member 2 [Gene - OMIM - HGNC]
  • PJA2:praja ring finger ubiquitin ligase 2 [Gene - OMIM - HGNC]
  • PRR16:proline rich 16 [Gene - OMIM - HGNC]
  • PRRC1:proline rich coiled-coil 1 [Gene - HGNC]
  • PCSK1:proprotein convertase subtilisin/kexin type 1 [Gene - OMIM - HGNC]
  • PGGT1B:protein geranylgeranyltransferase type I subunit beta [Gene - OMIM - HGNC]
  • REEP5:receptor accessory protein 5 [Gene - OMIM - HGNC]
  • RGMB:repulsive guidance molecule BMP co-receptor b [Gene - OMIM - HGNC]
  • SEMA6A:semaphorin 6A [Gene - OMIM - HGNC]
  • SRFBP1:serum response factor binding protein 1 [Gene - OMIM - HGNC]
  • SRP19:signal recognition particle 19 [Gene - OMIM - HGNC]
  • SLC12A2:solute carrier family 12 member 2 [Gene - OMIM - HGNC]
  • SLC25A46:solute carrier family 25 member 46 [Gene - OMIM - HGNC]
  • SLC27A6:solute carrier family 27 member 6 [Gene - OMIM - HGNC]
  • SLCO4C1:solute carrier organic anion transporter family member 4C1 [Gene - OMIM - HGNC]
  • SLCO6A1:solute carrier organic anion transporter family member 6A1 [Gene - OMIM - HGNC]
  • SNX24:sorting nexin 24 [Gene - HGNC]
  • SNX2:sorting nexin 2 [Gene - OMIM - HGNC]
  • SPMIP10:sperm microtubule inner protein 10 [Gene - HGNC]
  • SPATA9:spermatogenesis associated 9 [Gene - OMIM - HGNC]
  • SNCAIP:synuclein alpha interacting protein [Gene - OMIM - HGNC]
  • TSSK1B:testis specific serine kinase 1B [Gene - OMIM - HGNC]
  • TSLP:thymic stromal lymphopoietin [Gene - OMIM - HGNC]
  • TMED7:transmembrane p24 trafficking protein 7 [Gene - OMIM - HGNC]
  • TMEM232:transmembrane protein 232 [Gene - OMIM - HGNC]
  • TRIM36:tripartite motif containing 36 [Gene - OMIM - HGNC]
  • ZNF474:zinc finger protein 474 [Gene - HGNC]
  • ZNF608:zinc finger protein 608 [Gene - HGNC]
Variant type:
copy number gain
Cytogenetic location:
5q14.3-23.3
Genomic location:
Chr5: 89949118 - 129317455 (on Assembly GRCh37)
Preferred name:
GRCh37/hg19 5q14.3-23.3(chr5:89949118-129317455)x3
HGVS:

    Condition(s)

    Synonyms:
    none provided
    Identifiers:
    MedGen: CN517202

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    Assertion and evidence details

    Submission AccessionSubmitterReview Status
    (Assertion method)
    Clinical Significance
    (Last evaluated)
    OriginMethodCitations
    SCV000991431Bionano Laboratories
    no assertion criteria provided
    Pathogenic
    (May 12, 2017)
    unknownclinical testing

    Summary from all submissions

    EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
    not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

    Details of each submission

    From Bionano Laboratories, SCV000991431.1

    #EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
    1not providednot providednot providednot providedclinical testingnot provided
    #SampleMethodObservation
    OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
    1unknownunknownnot providedBuccalnot providednot providednot providednot providednot provided

    Last Updated: Oct 14, 2023