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GRCh38/hg38 1q31.3(chr1:194260752-196604554)x1 AND See cases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Aug 2, 2012
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV000139642.5

Allele description [Variation Report for GRCh38/hg38 1q31.3(chr1:194260752-196604554)x1]

GRCh38/hg38 1q31.3(chr1:194260752-196604554)x1

Genes:
  • LOC129932151:ATAC-STARR-seq lymphoblastoid active region 2273 [Gene]
  • LOC129932152:ATAC-STARR-seq lymphoblastoid silent region 1658 [Gene]
  • LOC126805963:CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:195950386-195951585 [Gene]
  • LOC129388709:MPRA-validated peak612 silencer [Gene]
  • LOC129388710:MPRA-validated peak613 silencer [Gene]
  • LOC129388711:MPRA-validated peak614 silencer [Gene]
  • LOC129388712:MPRA-validated peak616 silencer [Gene]
  • LOC129388713:MPRA-validated peak617 silencer [Gene]
  • LOC129388714:MPRA-validated peak621 silencer [Gene]
  • LOC129388715:MPRA-validated peak624 silencer [Gene]
  • LOC129388716:MPRA-validated peak625 silencer [Gene]
  • LOC129388717:MPRA-validated peak626 silencer [Gene]
  • LOC129388718:MPRA-validated peak630 silencer [Gene]
  • LOC129388719:MPRA-validated peak631 silencer [Gene]
  • LOC121725067:Sharpr-MPRA regulatory region 1679 [Gene]
  • LINC01724:long intergenic non-protein coding RNA 1724 [Gene - HGNC]
  • MIR4735:microRNA 4735 [Gene - HGNC]
  • KCNT2:potassium sodium-activated channel subfamily T member 2 [Gene - OMIM - HGNC]
Variant type:
copy number loss
Cytogenetic location:
1q31.3
Genomic location:
Preferred name:
GRCh38/hg38 1q31.3(chr1:194260752-196604554)x1
HGVS:
  • NC_000001.11:g.(?_194260752)_(196604554_?)del
  • NC_000001.10:g.(?_194229882)_(196573684_?)del
  • NC_000001.9:g.(?_192496505)_(194840307_?)del
Links:
dbVar: nssv1605214; dbVar: nsv917146
Observations:
1

Condition(s)

Name:
See cases [See the Variation display for details]
Identifiers:

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV000180227ISCA site 1

See additional submitters

no assertion criteria provided
Uncertain significance
(Aug 2, 2012) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providednot providedyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Miller DT, Adam MP, Aradhya S, Biesecker LG, Brothman AR, Carter NP, Church DM, Crolla JA, Eichler EE, Epstein CJ, Faucett WA, Feuk L, Friedman JM, Hamosh A, Jackson L, Kaminsky EB, Kok K, Krantz ID, Kuhn RM, Lee C, Ostell JM, Rosenberg C, et al.

Am J Hum Genet. 2010 May 14;86(5):749-64. doi: 10.1016/j.ajhg.2010.04.006. Review.

PubMed [citation]
PMID:
20466091
PMCID:
PMC2869000

Details of each submission

From ISCA site 1, SCV000180227.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providedDiscovery1not providednot providednot provided

Last Updated: May 7, 2024