1KN7


Conserved Protein Domain Family
K_channel_TID

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pfam07941: K_channel_TID 
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Potassium channel Kv1.4 tandem inactivation domain
This family features the tandem inactivation domain found at the N-terminus of the Kv1.4 potassium channel. It is composed of two subdomains. Inactivation domain 1 (ID1, residues 1-38) consists of a flexible N-terminus anchored at a 5-turn helix, and is thought to work by occluding the ion pathway, as is the case with a classical ball domain. Inactivation domain 2 (ID2, residues 40-50) is a 2.5 turn helix with a high proportion of hydrophobic residues that probably serves to attach ID1 to the cytoplasmic face of the channel. In this way, it can promote rapid access of ID1 to the receptor site in the open channel. ID1 and ID2 function together to being about fast inactivation of the Kv1.4 channel, which is important for the channel's role in short-term plasticity.
Statistics
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PSSM-Id: 429748
Aligned: 6 rows
Threshold Bit Score: 32.6376
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1KN7_A         4 MEVAMVSAESSGCNSHMPYGYaAQARARERER-----LAHSRAAAAAAVAAAT-AAVE----GTGGSGGGPHHHH--QTR 71 
1_pfamImport   1 MEVAMVSADSSGCNTHLPYGYaAQARARERER-----LAQSRAAAAAAVGGGG-GGGG----GGGGGGGGDHHYHqeQSR 70 
Q61423         1 MEVAMVSAESSGCNSHMPYGYaAQARARERER-----LAHSRAAAAAAVAAAT-AAVE----GTGGSGGGPHHHH--QTR 68  house mouse
XP_013978302   1 MEVAMVSAESSGCNSHMPYGYaAQARARERER-----LAQSRAAAAAAVAAATaAAAE----GVGGPGGGAHQQH--QQH 69 
XP_005455796   1 MEFAMVGAD-GGCNSHLPYGY-AQARARERERererqVAHTRAAAAAAAAEGG-TCTE----GGGGGGGGSCGGV--GGS 71 
XP_022522782   1 MEFAMVGADSGGCNPHMPYGY-AQARARERERe---rERHSRAAAAAAAAAAAaAAADsgatGEGGGTGGTCIHG--QQH 74 
1KN7_A        72 GAY 74 
1_pfamImport  71 GAS 73 
Q61423        69 GAY 71  house mouse
XP_013978302  70 QQH 72 
XP_005455796  72 TSN 74 
XP_022522782  75 QVR 77 
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