2IQJ,2CRR


Conserved Protein Domain Family
ArfGap_SMAP

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cd08839: ArfGap_SMAP 
Click on image for an interactive view with Cn3D
Stromal membrane-associated proteins; a subfamily of the ArfGAP family
The SMAP subfamily of Arf GTPase-activating proteins consists of the two structurally-related members, SMAP1 and SMAP2. Each SMAP member exhibits common and distinct functions in vesicle trafficking. They both bind to clathrin heavy chain molecules and are involved in the trafficking of clathrin-coated vesicles. SMAP1 preferentially exhibits GAP toward Arf6, while SMAP2 prefers Arf1 as a substrate. SMAP1 is involved in Arf6-dependent vesicle trafficking, but not Arf6-mediated actin cytoskeleton reorganization, and regulates clathrin-dependent endocytosis of the transferrin receptors and E-cadherin. SMAP2 regulates Arf1-dependent retrograde transport of TGN38/46 from the early endosome to the trans-Golgi network (TGN). SMAP2 has the Clathrin Assembly Lymphoid Myeloid (CALM)-binding domain, but SMAP1 does not.
Statistics
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PSSM-Id: 350068
Aligned: 38 rows
Threshold Bit Score: 184.012
Created: 8-Feb-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding sitearginine finger
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:2IQJ; human ArfGAP domain of SMAP2 binds Zn(2+) ion
    View structure with Cn3D
  • Comment:the coordination of the Zn2+ ion by 4 cysteines would indicate that this ion plays a structure stabilization rather than catalytical role.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #  #                 #  #                                           
2IQJ_A        18 LANLLLEedNKFCADCQSk-GPRWASWNIGVFICIRCAGIHRNLGvHISRVKSVNLDQWTQEQIQCMQe-MGNGKANRLY 95  human
GAA49547       7 LFKMVREtnNAFCADCGDp-GPLWASWNLGVFVCVRCAAVHRKIGtHISKVKSLQLDSWTPAQVQAMSl-SNNIQSRKIY 84  Clonorchis sine...
XP_004334816  12 LADLLKQpeNKECADCGAk-GPKWASWSIGVFLCINCAGIHRSLGtHISKVKSATLDKWTDEQIDNMRn-MGNARAKLIY 89  Acanthamoeba ca...
XP_001828574  16 LREMVRRpeNKVCADCKRn-DPRWASWNLGVFLCIRCSGIHRGMGtHISKVKSVDLDVWTPEQMESIQk-WGNRRANLYW 93  Coprinopsis cin...
EEU41052      20 IKSLLKLepNKVCADCKRnkHPRWASWNLGVFICIRCSGIHRGMGtHISRVKSVDLDSWTDEQLQSILs-WGNARANKYW 98  Nectria haemato...
Q9UT34        16 LKSLLREpyNKVCADCKRneQPRWASWNLGVFICIRCSGVHRSLGvHVSRVKSVDLDSWTDEQTENMTr-WGNERANLYW 94  Schizosaccharom...
EAA28293      20 IKSLLKLeaNKVCADCKRnkHPRWASWNLGVFICIRCSGIHRGMGtHISRVKSVDLDAWTDEQLQSVLn-WGNARANKYW 98  Neurospora cras...
P40529        11 LSALLRDpgNSHCADCKAqlHPRWASWSLGVFICIKCAGIHRSLGtHISKVKSVDLDTWKEEHLVKLIqfKNNLRANSYY 90  Saccharomyces c...
KCV71785      11 LMELVGRpeNKTCADCGEk-GPRWASWNIGCFICMNCAGVHRRLGtHISRVKSITLDNWTDEQLASIAs-KGNANVNAIY 88  Fonticula alba
OAF69999      32 LTKLIQIpeNSVCCDCNKr-GARWASWNIGIFLCIQCAGIHRNLGaHISKVKSVNLDIWTEEQVSVVQh-IGNKISNQAY 109 Intoshia linei
Feature 1                                                           
2IQJ_A        96 EAylpetfrr--------------------------pqidpaveGFIRDKY 120 human
GAA49547      85 EAtlpdsfir--------------------------pqsdagleAFIRAKY 109 Clonorchis sinensis
XP_004334816  90 EAalpagyprpregapsqyyspsirrdepsfvdsltwtlrstleSWIRAKY 140 Acanthamoeba castellanii str. Neff
XP_001828574  94 EAhlkpghn----------------------------ppehkmeSFVRSKY 116 Coprinopsis cinerea okayama7#130
EEU41052      99 EAklasgha----------------------------pseakieNFIRTKY 121 Nectria haematococca mpVI 77-13-4
Q9UT34        95 EAklagghv----------------------------psdskiaTFIKTKY 117 Schizosaccharomyces pombe 972h-
EAA28293      99 EAklaqghv----------------------------pseskieNFIRTKY 121 Neurospora crassa OR74A
P40529        91 EAtladelkqr------------------------kitdtsslqNFIKNKY 117 Saccharomyces cerevisiae S288C
KCV71785      89 DPhpetrqprd-------------------------lknstnleRFIRDKY 114 Fonticula alba
OAF69999     110 EKnlkpnvrr---------------------------rsrmsmaNYIREKY 133 Intoshia linei

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