5VC8,6UE6


Conserved Protein Domain Family
PWWP_NSD2_rpt1

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cd20162: PWWP_NSD2_rpt1 
Click on image for an interactive view with Cn3D
first PWWP domain found in nuclear SET domain-containing protein 2 (NSD2) and similar proteins
NSD2, also called histone-lysine N-methyltransferase NSD2, multiple myeloma SET domain-containing protein (MMSET), or protein trithorax-5 Wolf-Hirschhorn syndrome candidate 1 protein (WHSC1), is overexpressed frequently in the t(4;14) translocation in 15% to 20% of multiple myeloma. It plays important roles in cancer cell proliferation, survival, and tumor growth, through mediating constitutive NF-kappaB signaling via the cytokine autocrine loop. It also enhances androgen receptor (AR)-mediated transcription. The principal chromatin-regulatory activity of NSD2 is dimethylation of histone H3 at lysine 36 (H3K36me2). NSD2 contains a catalytic suppressor of variegation, enhancer of zeste and trithorax (SET) domain, two proline-tryptophan-tryptophan-prolin motif (PWWP) domains, a high mobility group (HMG) box, five PHD (plant-homeodomain) zinc finger motifs, and an NSD-specific Cys-His rich domain (C5HCH). The SET domain is responsible for histone methyltransferase activity. The PWWP, HMG, and PHD domains mediate chromatin interaction and recognition of histone marks. This model corresponds to the first PWWP domain. The PWWP domain specifically recognizes DNA and histone methylated lysines.
Statistics
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PSSM-Id: 438990
Aligned: 7 rows
Threshold Bit Score: 251.371
Created: 9-Jan-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:5VC8; Homo sapiens NSD2 binds DNA, contacts at 4A.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                         
5VC8_A         11 YNVGDLVWSKVSGYPWWPCXVSADPlLHSYTKLKGqk-ksARQYHVQFFGDAPERAWIFEKSLVAFEGEgQFEKLCQESA 89   human
6UE6_A         11 YNVGDLVWSKVSGYPWWPCMVSADPlLHSYTKLKGqk-ksARQYHVQFFGDAPERAWIFEKSLVAFEGEgQFEKLCQESA 89   human
O96028        220 YNVGDLVWSKVSGYPWWPCMVSADPlLHSYTKLKGqk-ksARQYHVQFFGDAPERAWIFEKSLVAFEGEgQFEKLCQESA 298  human
NP_001084939  191 YSVGDVVWSKVSGYPWWPCMVTSDPvLYSHTKVKGqk-knVRQYHVQFFGNAPERAWISEKSMVPFKGEnEYDHLCQESA 269  African clawe...
KYO45647      160 YNIGDLVWSKVSGFPWWPCMVSADPvLHSYTKLKGqk-ksFRQYHVQFFGDAPERAWIFEKSLVPFKGKdQFEQLCQESA 238  American alli...
XP_007898576  248 YNVGDMVWSKVSGYPWWACMISSDPlLNTHTKVKGlnraiGRQYHVQFFGEAPERAWIFEKSIVPFEGAqQYDQLIQDCA 327  elephant shark
XP_006004823  220 YGIGAIVWSKVSGYPWWPCMVSADPlLNSHFRIKGqn-rtFRQYHVQFFGDAPERAWICEKGIVPYEGQeQFEQLCQESI 298  coelacanth
Feature 1             ###  ##                                      
5VC8_A         90 KQapTKAEKIKLLkpISGKLRAQWEXGIVQAEEAASxSVEERKAKFTFL 138  human
6UE6_A         90 KQapTKAEKIKLLkpISGKLRAQWEMGIVQAEEAASmSVEERKAKFTFL 138  human
O96028        299 KQapTKAEKIKLLkpISGKLRAQWEMGIVQAEEAASmSVEERKAKFTFL 347  human
NP_001084939  270 KQasTKAEKTKLLkpITGKIRVQWDIGIEQAKEAVLmTPEERKEKFTFI 318  African clawed frog
KYO45647      239 KQalTKAEKIKMLkpVSGKLRPQWEMGIKQASEALGmSVEERKAKYTFL 287  American alligator
XP_007898576  328 KHatSKAEKNKLLkpIPAKIRVQWDVGISQAEEALMmTPEDRKAKYTFV 376  elephant shark
XP_006004823  299 KQa-AKTEKNKLRktVPAKWRAQWDIGLTQAEEAKEmTVEDRKAKYTFV 346  coelacanth

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