1T1D,1EOD,1EOE,1EOF


Conserved Protein Domain Family
BTB_POZ_Shaker-like

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cd18410: BTB_POZ_Shaker-like 
Click on image for an interactive view with Cn3D
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster potassium voltage-gated channel protein Shaker and similar proteins
Shaker, also termed protein minisleep, represents a family of putative potassium channel proteins in the nervous system of Drosophila. It is a voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a tetrameric potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient. Shaker plays a role in the regulation of sleep need or efficiency. Voltage-gated potassium (Kv) channels are composed of alpha subunits, which form the actual conductance pore, and cytoplasmic beta subunits, which are auxiliary proteins that associate with alpha subunits to modulate the activity of the Kv channel. Shaker is an alpha subunit that forms functional homo- or hetero-tetrameric channels (with other alpha subunits) through its BTB/POZ domain, also known as tetramerization (T1) domain, which is a versatile protein-protein interaction motif.
Statistics
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PSSM-Id: 349717
Aligned: 10 rows
Threshold Bit Score: 181.667
Created: 14-Sep-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 27 residues -Click on image for an interactive view with Cn3D
Feature 1:putative tetramer interface [polypeptide binding site]
Evidence:
  • Comment:based on the tetramer structure of Rattus norvegicus voltage-gated potassium channel Kv1.2 BTB domain

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #   # ########  #                   #  #   # ## ##  #   #  #   # #   #   ##  # 
1T1D_A         1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNryYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEE 80  California sea ...
1EOD_A         1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNryYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVDVPLDVFSEE 80  California sea ...
1EOE_A         1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNryYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPRNVPLDVFSEE 80  California sea ...
1EOF_A         1 ERVVINVSGLRFETQLKTLNQFPDTLLGNPQKRNryYDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVAVPLDVFSEE 80  California sea ...
P08510        97 ERVVINVSGLRFETQLRTLNQFPDTLLGDPARRLryFDPLRNEYFFDRSRPSFDAILYYYQSGGRLRRPVNVPLDVFSEE 176 fruit fly
EEC13833      91 ERVVINVSGLRFETQLRTLHQFPDTLLGDPGRRLryFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFAEE 170 black-legged tick
XP_002736169  59 ERVVINVSGLRFETQLRTLNQFPDTLLGNPEKRIryFDPLRNEYFFDRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEE 138 Saccoglossus ko...
EFX75014      66 ERVVINVSGLRFETQLRTLNQFPETLLGDPARRIryFDPLRNEYFFDRNRPCFDAILYYYQSGGRLRRPVNVPLDVFSEE 145 common water flea
ELU01478      66 ERVVINVSGLRFETQLKTLNQFPETLLGDPQRRNryYDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEE 145 Capitella teleta
XP_013403461 169 ERVIINVSGLRFETQLKTLSQFPESLLGDPARRNryYDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDVFSEE 248 Lingula anatina
Feature 1                            
1T1D_A        81 IKFYELGenafeRYREDEGF 100 California sea hare
1EOD_A        81 IKFYELGenafeRYREDEGF 100 California sea hare
1EOE_A        81 IKFYELGenafeRYREDEGF 100 California sea hare
1EOF_A        81 IKFYELGenafeRYREDEGF 100 California sea hare
P08510       177 IKFYELGdqainKFREDEGF 196 fruit fly
EEC13833     171 IKFYELGegtfnKFREDEGF 190 black-legged tick
XP_002736169 139 IKFYELGdeaveKYRADEGF 158 Saccoglossus kowalevskii
EFX75014     146 IKFYELGetaisKFREDEGF 165 common water flea
ELU01478     146 IKFYELGeeaieKYRCDEGF 165 Capitella teleta
XP_013403461 249 IKFYELGeeaitKFREDEGF 268 Lingula anatina

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