Conserved Protein Domain Family
RlmL

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COG0116: RlmL (this model, PSSM-Id:223194 is obsolete and has been replaced by 439886)
23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]
Statistics
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PSSM-Id: 223194
Aligned: 32 rows
Threshold Bit Score: 281.505
Created: 7-Oct-2002
Updated: 2-Oct-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
17547458   3 IAY--FAPCPRGLEQALADELaeiairpevDELAAFEVGRTVPGGVHFF----------GTQG---AAYAVNLHSRIASR 67  Ralstonia solanacearum
6137242   29 LVVrfYATLTPGLEDVAAKEVesf----gcKVEEIRER----RGRIFFS----------GEKS---AIPLLNHFSRTLER 87  Archaeoglobus fulgidus
14600803   1 --MrfLATCNPGTEDVVAREIve-----evDSAKVEEVG-EYRGRIVFR----------SSGEp-wLVAEQIYGLRSIHS 61  Aeropyrum pernix
15806672  14 NRSsvGKTSKKSRPKGDYRARqpareyeldVLPGLEEVAATELAGVPLA----------RDVRglrFWYPGSPERLTRLR 83  Deinococcus radiodu...
2501584    1 --MdyYVTLSPGLEKISKNEIesf----ggKIKEIREN----KGRIFFS----------GDLK---LIPKINYLSRTIER 57  Methanocaldococcus ...
20094405   1 MTSgvLCTTAPGLEDVCAQELge------iTGKSVRENYLGVRGRVLVEc---------SEHEaldLAREINRRSLTVHR 65  Methanopyrus kandle...
15598244   3 DVYelFLTCPKGLESLLLEEA---------QGLGLDEA-RAQVSAVRGQ----------GSLE---VAYRLCLWSRLANR 59  Pseudomonas aerugin...
14521594   1 -MLklLLTTAQGIEDLASREVlnl---lgdSVVRIEEKPFNVEGRILVEvkekeykdekGRKRpfdFATYLNENSRLLHR 76  Pyrococcus abyssi
14590534   1 --MrlLLTTAQGIEDIAKKEImel---lkeNTVTIQEKPFNVEGRLLVEvketfytdekGRKRpfeFATYLNEKSKTLHR 75  Pyrococcus horikoshii
15839240  23 DDVrfFVSCAKGLEYLLVDEV---------LALGAVG-ATATVAGVNVE----------GGLC---DAQRLVLWSRLASR 79  Xylella fastidiosa ...
17547458  68 VLMRLGARGYRS---------EDDIYSLTAAQRWEDHFSPDETIRVD-VTAHKSPLQSLNFVALRVKDGICDRFRQRAGA 137 Ralstonia solanacearum
6137242   88 LNVLLLRCEVEG---------LDDIYAAVKGLDFS-FVK-GKSFAIRsLR-VGEHDFTSMDIARVAGQAVIDSFMESYGE 155 Archaeoglobus fulgidus
14600803  62 ASLLLAEAEVSPgr-----egLEEVWRAAYKSGAHLHIPYGATFAVRgERIGEGHSYTSVEIASTVGDAVQRAAEESLGW 136 Aeropyrum pernix
15806672  84 SAVAVYRIKSWDvp------rPRGLLGHQQLGELVSYVREVTEVGGHrSFRIGAAGKESPTMQRLAEELSAALGLPHDPE 157 Deinococcus radiodu...
2501584   58 MNILLHREEIPNi-------aLDDIYKRVYNIDWTEWIKENQSFAIRpLR-AGEHNFTSIDIGRVAGEAVIKSYQRDKNI 129 Methanocaldococcus ...
20094405  66 AAVLLGGFEIEHrde----rgLEEIRERCRELPFERYIHEHDTFGVRpSR-LGEHDFTSVDVGAAVGDAVIERIKREEGF 140 Methanopyrus kandle...
15598244  60 VLLVLARFPVEN---------AESMYMAVHAVNWEDHLDAGGTLAVE-FSGKGSGIDNTHFGALKVKDAIVDNLRERSGR 129 Pseudomonas aerugin...
14521594  77 VIVEIASTKFEGieredpekaLKRIEDFVSEIPVEKFVKVSESFAVRsFR-EGEHEVTSVDIARIVGKAIFERLSR-FGT 154 Pyrococcus abyssi
14590534  76 VIIEIASHEFKGiteenpekaLKRIEEFTVNIPVERFIKVTESFAVRaFR-KGEHTITSVDIARVVGKAIFDRLSR-IGS 153 Pyrococcus horikoshii
15839240  80 VLWPLAAFACAD---------EDALYAGVAALPWVEHVLPGQTLAVD-AHVSGEAITHARYAAQRVKDAVVDTLRDAGVV 149 Xylella fastidiosa ...
17547458 138 RP-SVDTVSPDVRIYAYLSETDCTLYLDTTGE-PLFKRGWRQEKGEAPLKENLAAGILRLTGWTGAqgQ--PFYDPMCGS 213 Ralstonia solanacearum
6137242  156 Rl-KVNLNQPDVIIRVELVDSELFVGVDTTGDdAMHKRWWRVYNHPAHLNAAIACGMLRIADWKVD--E--SLIDPMCGS 230 Archaeoglobus fulgidus
14600803 137 RP-MVRLNSPQVVLHAEVDIFTFRLGVLLTGErSRHRRRYRVYDHPAALKASLAYVMLRLAGARDG--D--TILDPMCGG 211 Aeropyrum pernix
15806672 158 EGeLLLRLRPSADRQ-GADGQGWDVLARITPR-PLSARAWRECNMGGGLNATIAYAMHKLAGQRDEd----RIFNPMSGS 231 Deinococcus radiodu...
2501584  130 Rl-KVNLDEPDVIVRVEVIFDELIVGIDTTGDiALDKRGYRVFNHPAHLNATIASSLVYLSDWKDD--E--MLLDPMCGS 204 Methanocaldococcus ...
20094405 141 RP-QVDLDAPSVIVRADVVGDTVIVGVCTTGDrSLHQRGYRVYDHPAALNPVIAQGMLELAGDPDS------LIDPTCGG 213 Methanopyrus kandle...
15598244 130 RP-SVDKVNPDVRVHLHLDRGQATLSLDLSGH-SLHQRGYRLQQGAAPLKENLAAAVLIRAGWPKIaaEggALADPMCGV 207 Pseudomonas aerugin...
14521594 155 p--RVNLDHPTVIFRAELIGEAFFLGIDTTGDhSLHRRPWRVYDHPAHLKSSIANALIELAQPEG------SFIDPFCGS 226 Pyrococcus abyssi
14590534 154 p--IVNLDHPSTIVRAELINEAFFLGIDTTGDhSLHRRPWRVYDHPAHLKASIANALIELAEVEDG--A--SFIDPFCGS 227 Pyrococcus horikoshii
15839240 150 RP-SVDVEHPDVRLNLSLRKGRATLSVDLGGR-ALHHRGWRQAPHAASLKEHLAAAVLLRAGWAKVyaEggGLLDPMCGS 227 Xylella fastidiosa ...
17547458 214 GTFLVEAAQRALGVAPGGQR--A--------------FACEWMRDHDAKRFKRLREAAADAAGAAmRHRPpLIAGADIST 277 Ralstonia solanacearum
6137242  231 GTIPIEAALMVRNVP--NLRd------------------------FAYKKLCEWELAFEPNEVRL------KLYGMEKFR 278 Archaeoglobus fulgidus
14600803 212 GTVAVEAALLFET-----SR----------------------------------------------------VYCVDLNP 234 Aeropyrum pernix
15806672 232 GTLLIERALLGP------------------------------------------------YAA---------LVGVDIDP 254 Deinococcus radiodu...
2501584  205 GTIPIEGALMKRNIPPGKFRenK--------------YGFKFIDIFGYELLDKIKKEIVENKNIY------KIIGLDKNQ 264 Methanocaldococcus ...
20094405 214 ATVPIEALLRD----P--------------------------------------------ET---------EAVGVEKFR 236 Methanopyrus kandle...
15598244 208 GTFLVEAALMAADIAPNLKRe-R--------------WGFSSWLGHVPALWRKLHEEAQQRAAAGlARPPlWIRGYEADP 272 Pseudomonas aerugin...
14521594 227 GTIPIELALRG-------YEg--------------------------------------------------KIICLEKYH 249 Pyrococcus abyssi
14590534 228 GTIPIELALRG-------YQg--------------------------------------------------RIICLEKFA 250 Pyrococcus horikoshii
15839240 228 GTLLIEGALMVADVAPGLSRyaDpdaishvsvaerpvLLPSRWRGFDVVAWEALVVDAQQRARRGlAELRpVLHGSDIDP 307 Xylella fastidiosa ...
17547458 278 DMLAYAAANWRRAGLPGEPVLKQVDARFGKPPF-----EAPGVLLMNPPYGerivVRgahgsrrrgpegetgdqdgtvFE 352 Ralstonia solanacearum
6137242  279 KHLVGAIRNAVNAGVADTIEFRQGDAT---EMTg-----EYDVIITNPPYG----LR---------------------IH 325 Archaeoglobus fulgidus
14600803 235 RHTRGARLNAESARVGGRVEVYTWDARMLHELLg---eDSVDRIVSNPPYG----IR---------------------LG 286 Aeropyrum pernix
15806672 255 VAVACARTNLRAAGKEVEVAQVDALHTGLPSR-------SFDLVISDLPWG----DA---------------------IG 302 Deinococcus radiodu...
2501584  265 KYLDGAKDNAKNAEVLDTIEFICGDATKLHEKFn-----ESDVIIANPPYG----IR---------------------IG 314 Methanocaldococcus ...
20094405 237 THYEGARLNVLAARVD--VELYLADATRLFEEVpelrdREFDAAVFNPPYG----LK---------------------IA 289 Methanopyrus kandle...
15598244 273 RLIQPACNNIERAGVADWVKIYQGELATFEPRPd---kGQTGLVICNPPYG----ER---------------------LG 324 Pseudomonas aerugin...
14521594 250 KHLNGAKMNALAAGVYDKIEFILGDATRLSEYLe-----SVDFAVSNLPYG----LK---------------------IG 299 Pyrococcus abyssi
14590534 251 KHLNGAKMNALAAGVFDKIEFIKGDARRLSKYVd-----EVDFAVSNLPYG----LK---------------------IG 300 Pyrococcus horikoshii
15839240 308 RALGAAFANARAAGVQDAIEFVVAGIDVLPAVF-----EPHGVVVCNAPYD----VR---------------------LA 357 Xylella fastidiosa ...
17547458 353 RAsrAMGAGrddprrpsrelrqpepapvIDPreeaaanefaqAFAGTLKREFAGWQAFVFTGDLSMPRRMRLKESQRTPL 432 Ralstonia solanacearum
6137242  326 RK--GAIER-------------------LYH-----------SFARAAKRCMNQNSRLVIITAEHRVFANAAEEAGLQCT 373 Archaeoglobus fulgidus
14600803 287 DP--VDVRi-------------------LYR-----------EFMPSAARVLRSGGRAAIITAETKALVAAARSSGLRMA 334 Aeropyrum pernix
15806672 303 SH--QSNET-------------------LYP-----------AFLKEMHRLTSRRGRLCLLTHELRLFERVMREQSDWEA 350 Deinococcus radiodu...
2501584  315 SK--RSVKK-------------------LYD-----------EFLSSAKEIMHGSSRLIVITAEDKMFKDAIAKNNFEVK 362 Methanocaldococcus ...
20094405 290 NP--RVVKT-------------------LYR-----------GLARVLSDLVSV---VVTVTPRDGWMRAAMEEYGFRLS 334 Methanopyrus kandle...
15598244 325 DE--ASLLY-------------------LYQ-----------NLGERLRQSCIGWSAGVFTGAPELGKRMGIRSHKQYAF 372 Pseudomonas aerugin...
14521594 300 RR--SMIPE-------------------LYS-----------KFLSELAKVLEK--RGVFITTEKNAIERAIEENGFKII 345 Pyrococcus abyssi
14590534 301 RK--SMIPS-------------------LYE-----------RFFDELSKVLQK--RGVFITTEKEAIEKAIEEVGFKIT 346 Pyrococcus horikoshii
15839240 358 AN----PG--------------------LYR-----------HLGDALRRVVPRWRAALVCGSSPLAFATGLRAGKKYQF 402 Xylella fastidiosa ...
17547458 433 YNGNIECRLFRFEMVKGGM 451 Ralstonia solanacearum
6137242  374 HERFVKYGGLLTKIMVFMI 392 Archaeoglobus fulgidus
14600803 335 GARRVRHGDLWVDIVVLEK 353 Aeropyrum pernix
15806672 351 KELFQVYSGGHHPKAYLLH 369 Deinococcus radiodurans
2501584  363 EEFNVMFGGLMTRVFYLTL 381 Methanocaldococcus jannaschii
20094405 335 HDRWVRHGGLDVRLLVFR- 352 Methanopyrus kandleri AV19
15598244 373 WNGALACKLLMIQVEPRQF 391 Pseudomonas aeruginosa PA01
14521594 346 HHRLIGHGGLRVHAYVIE- 363 Pyrococcus abyssi
14590534 347 HYRIIGHGGLRVHTYVIS- 364 Pyrococcus horikoshii
15839240 403 FNGALECVlivcdpvvpla 421 Xylella fastidiosa 9a5c
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