Conserved Protein Domain Family
C9orf72-like

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pfam15019: C9orf72-like (this model, PSSM-Id:405673 is obsolete and has been replaced by 464450)
C9orf72-like protein family
The precise function of this family is unknown but members have been found to be localized in the cytoplasm of brain tissue. Defects in the gene, C9orf72, are the cause of frontotemporal dementia and/or amyotrophic lateral sclerosis (FTDALS) which is an autosomal dominant neurodegenerative disorder. The disorder is caused by a large expansion of a GGGGCC hexa-nucleotide within the first C9orf72 intron located between the first and the second non-coding exons. The expansion leads to the loss of transcription of one of the two transcripts encoding isoform 1 and to the formation of nuclear RNA foci. This domain family is found in eukaryotes, and is typically between 230 and 250 amino acids in length. There is a single completely conserved residue F that may be functionally important.
Statistics
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PSSM-Id: 405673
Aligned: 20 rows
Threshold Bit Score: 197.488
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_001323420  48 YLLKLNTYIPSSeKDMRLKNILFRHVDSHQLNLGSFASIYQITNDDVK---RNYCVAII--YNLKKIDMSFEQEQQIKYF 122 Trichomonas vag...
EAY20222      48 SLSRMTLSTLPRqKESAFNKFLTTVLDIASSDWFVVNTIFKVPKSKPQqldVYYSVAII--FKSSQFKKVQHVIEATKYY 125 Trichomonas vag...
XP_001582692  43 ELLKLTLSNVHRqEDNAFSQFLTSTTDIPSLNLFIVSSFFIIPQKKEK---IYYNVSLI--LNRNQID-TTKFISNIEDT 116 Trichomonas vag...
EAY02049      39 SLFRLLLANVHRqKDNAYSSYVTSIIELQSYNWYVVATLFSITQNQRK---TFYALTLI--LDTHHIPNYRNSIKILSQH 113 Trichomonas vag...
XP_001308726  56 IPPQSKSNSSPQqETPAALEFQTSIVSIPSNGHQLVTTKFQNNKQNKI---TSYCMIFV--LYIKNIIHSDELNSMLNSV 130 Trichomonas vag...
EAY20903      48 SLYKIVLGNVHRqNDTALNKIIPISLEIHQFNCYLICAIFGIKINEKT---IFYIYGLF--LQHDKIHNNLDILRPLLKK 122 Trichomonas vag...
EAY09034      49 DLLKFNLLNVQQqQQSSFADCPASFFQLLEHKISYFASIFIHQADSYP---EYWCFAIF--INETKVNLKTLYVNTVTQQ 123 Trichomonas vag...
EAY11962      37 EIVSIILSNANDqPQGHFTRFPLSNLEFQSKKMHVFASSFSQSQSDNS---IFYTFAIF--VNSLAIEAKPFIQDNITEA 111 Trichomonas vag...
XP_001330237  47 SYNRIVMSGVTRhDQEHFAKNPSFFFDFPENKLLLFGNFFPSITEPNQ----TYALTFF--VHSEENMITKTQIPYFHSF 120 Trichomonas vag...
EGD73803     202 VLPRLTTGGELTrNMEADGSCASRYYRLPAEGFELGTFVFLADVDGAT---CPCALSLVkeLPPTEVSRYLKLFGVCRDR 278 Salpingoeca ros...
XP_001323420 123 LKQITHSTRSALKFQQPLQIS-------TPLISRALEYLNRFTNAHIYKMPdf--psLPA-----------------DLM 176 Trichomonas vag...
EAY20222     126 AQHIVHASQLLLSRSEPFEKL-------TDLVQCAVIDISKLFHVGV-KPLdf--qiDPA-----------------EQS 178 Trichomonas vag...
XP_001582692 117 CKEIAIFAKTTLNSNLPINKL-------NILIQHANEVFEVLSKAGIKTLPdf--siHPT-----------------ETP 170 Trichomonas vag...
EAY02049     114 SLYLAAAAKSSFTNNFPLKKL-------ERFIQPIHQQCIDYFSSSIEQIPdf--eiFPG-----------------DLR 167 Trichomonas vag...
XP_001308726 131 STVAAAQAKAIIQKGDPIDYI-------NPIVARSVHHIKALLESHIEKTPpm--pqILQt----------------DIP 185 Trichomonas vag...
EAY20903     123 ATDGAMKIKITLQAKQPIHEA-------THYIQKLANEIKTLMKSGITTNFpi--prILPq----------------DSL 177 Trichomonas vag...
EAY09034     124 TCYCGKIVRKFCEENNINGAM--------PEVERILNIISQLLSPHTFSIQpm--klDYF-----------------DIN 176 Trichomonas vag...
EAY11962     112 VGTIALHLHSKLKNQKHLEKS-------DDFIMQIFKSNDMLMNSQICNPLpeiveiKPD-----------------EYE 167 Trichomonas vag...
XP_001330237 121 LALLIHNVQEIIKSGEHFLQA-------TPHITLFCTIALKLLLSGVQQPTkf--plTADk----------------CNF 175 Trichomonas vag...
EGD73803     279 MATLVKKFVAQLKHRKEGTTTtqvllrfTDDIGPFMIAVNHLGQQRALGQAdapqpsPFAdtaldlsesidgatfhlPRP 358 Salpingoeca ros...
XP_001323420 177 FHMIALTSHFETQMSTIIESNDYNQAKAMAQFLANFMFPYQLYHSSFEHLRR-PISGLYLQIIQCQAQ-SPED----ILL 250 Trichomonas vag...
EAY20222     179 LYAQILTAHLRGQMNTIFEVNSFSECERFFNFLTHFTLPEYLQYSSAELRSR-PNMFLHLQVIQKQNYpAEE-----ILL 252 Trichomonas vag...
XP_001582692 171 FLSLILSAHFHSQMNTIIESNNPDEAYKIAVFLAHFTLSQILETAPLEYLPA-PIQGLSIQTISRQVA-TPEE----ILL 244 Trichomonas vag...
EAY02049     168 FYSLVLSSHLATQVITIIESDDDTETYKLASFLANFLLPNQLIHSSLKISDK-ITPGLFLQCVSKQKT-DIVD----IFL 241 Trichomonas vag...
XP_001308726 186 FYSAALSSHFQTQMTTIIEASSIEIAKPIFDFLSHFLLPYQFALSSPIMHNE-PIRGLYLQCVRKCNE-LPKN----LLF 259 Trichomonas vag...
EAY20903     178 FYATALFSHLTSQMVTIIEASSFEEAEPLFSFLSKFLLKSQASLSSTLLLDE-PQPELFLQIVKERETiSMI-----KML 251 Trichomonas vag...
EAY09034     177 FLGTLIASHLQTQMTTIIESNNQEEAKLLFDILMNFCLDYQKSLSDKYYRNT-ILPFLYVQITWQQAA-IPMN----MLW 250 Trichomonas vag...
EAY11962     168 FFSTVLTSHLSTQMTTIIECSNEKQAAPLLTFLSHFMLPYQLELSSTEIRDS-IVQGLFLQCVKPQKDiPLA-----DLA 241 Trichomonas vag...
XP_001330237 176 FLQHCLASHLQTQMTTIIESKDENLAKTYFDFLSLFLTKEQLNLSSKLYTNR-VTPGLFLQIVSPQTVgFPPS----DLY 250 Trichomonas vag...
EGD73803     359 FLDICITCHLQTAGRSVIVGEDSEPVRRLLRTLALFLTQAEQETVRYDSTGSiYEPDLVLQVVN-----APVDkiesQVL 433 Salpingoeca ros...
XP_001323420 251 TFSFPCTWIRLSDKTVWQTPTMDEQ 275 Trichomonas vaginalis G3
EAY20222     253 QSTTARALVRLPEKIVLVTPAQSTQ 277 Trichomonas vaginalis G3
XP_001582692 245 TFKTPTTLIRLPEMQVIFSPYQDLQ 269 Trichomonas vaginalis G3
EAY02049     242 ASAHPITYVRMSERKIFTTSAPEKH 266 Trichomonas vaginalis G3
XP_001308726 260 QFDRSWTWVRADSHIVFQSPNIYRQ 284 Trichomonas vaginalis G3
EAY20903     252 NFERSWTWIRLKTKSVYISPDITSQ 276 Trichomonas vaginalis G3
EAY09034     251 EFKRPFTWVQLSQRIVIQSPAIEVQ 275 Trichomonas vaginalis G3
EAY11962     242 LYQRPWTFVSLKSHTVKQSPDWDSQ 266 Trichomonas vaginalis G3
XP_001330237 251 CYDRPWTWINLDKEEVIQGPDQSIQ 275 Trichomonas vaginalis G3
EGD73803     434 DANHPTTIIDPKLRVVRRTHNRDVY 458 Salpingoeca rosetta
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