Conserved Protein Domain Family
CYP4F

?
cd20679: CYP4F 
cytochrome P450 family 4, subfamily F
Cytochrome P450 family 4, subfamily F (CYP4F) enzymes are known for known for omega-hydroxylation of very long fatty acids (VLFA; C18-C26), leukotrienes, prostaglandins, and vitamins with long alkyl side chains. The CYP4F subfamily show diverse specificities among its members: CYP4F2 and CYP4F3 metabolize pro- and anti-inflammatory leukotrienes; CYP4F8 and CYP4F12 metabolize prostaglandins, endoperoxides and arachidonic acid; CYP4F11 and CYP4F12 metabolize VLFA and are unique in the CYP4F subfamily since they also hydroxylate xenobiotics such as benzphetamine, ethylmorphine, erythromycin, and ebastine. CYP4F belongs to the large cytochrome P450 (P450, CYP) superfamily of heme-containing proteins that catalyze a variety of oxidative reactions of a large number of structurally different endogenous and exogenous compounds in organisms from all major domains of life. CYPs bind their diverse ligands in a buried, hydrophobic active site, which is accessed through a substrate access channel formed by two flexible helices and their connecting loop.
Statistics
?
PSSM-Id: 410772
Aligned: 18 rows
Threshold Bit Score: 856.298
Created: 20-Sep-2017
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
 
heme bindingputative
Feature 1:heme binding site [chemical binding site]
Evidence:
  • Comment:based on the binding of Oryctolagus cuniculus CYP4B1 to heme, defined at 4A contacts

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                   #                  ##      #   #     
P78329        74 MRVLTQLVATYPQGFKVWMGPiSPLLSLCHPDIIRSVINASAAIapkdkFFYSFLEPWLGDGLLLSAGDKWSRHRRMLTP 153 human
Q3MID2        74 LLYIQSLSRTFRDVCCWWVGPwHPVIRIFHPAFIKPVILAPASVapkdrVFYRFLRPWLGDGLLLSTGDKWSRHRRMLTP 153 Norway rat
Q6NT55        82 LQDEKKVLDNMHHVLLVWMGPvLPLLVLVHPDYIKPLLGASAAIapkddLFYGFLKPWLGDGLLLSKGDKWSRHRRLLTP 161 human
Q99N16        74 LLYIQSLVRTFRDACCWWVGPlHPVIRIFHPAFIKPVVLAPALVapkdtVFYRFLKPWLGDGLLMSTGDKWSRHRRMLTP 153 house mouse
P51871        74 MQFIAHLGRNFRDIHLSWVGPvYPILRLVHPNVIAPLLQASAAVapkemTLYGFLKPWLGDGLLMSAGEKWNHHRRLLTP 153 Norway rat
P51870        74 MRLVTEMGQTFRDIHLCWLGPvIPVLRLVDPAFVAPLLQAPALVapkdtTFLRFLKPWLGDGLFLSSGDKWSRHRRLLTP 153 Norway rat
NP_001091388  82 LLVVDSLVKTYIYACSWWFSLcYPIVRLFHPSSIKPILQVSAAIaqkdeLFYGFLRPWLGDGLLLSHGEKWGRHRRLLTP 161 African clawed ...
XP_006002981  83 LQEILHIYECYVNVCTWWMGPfYPIVRVFHPNYAKPILLASAAVaqkdeLFYGFLRPWLGEGLLLSNGEKWSRHRRLLTP 162 coelacanth
XP_007908549  80 LRFIAQLVSQFHFTMKTWLGPfIPLISLFHPDYLKPVLLASAPValkdeLFYGFLRPWLGEGLLISSGERWSRHRRLLTP 159 elephant shark
NP_001316566  62 LQDVDKVVAQYRHGCLWWLSPwLPILRLFHPDTLRPVLMASAFTapkdkLFYGFLKPWLGDGLLLSRGDKWARHRRLLTP 141 chicken
Feature 1         #                                                                              
P78329       154 AFHFNILkpYMKIFNESVNIMHAKWQLLaseg---saclDMFEHISLMTLDSLQKCVFSFDSHCQEkpSEYIAAILELSA 230 human
Q3MID2       154 AFHFNILkpYVKIFNDSTNIMHAKWQRLasqg---sarlDMFEHISLMTLDSLQKCVFSFDSNCQEkpSEYITAILELSA 230 Norway rat
Q6NT55       162 AFHFDILkpYMKIFNQSADIMHAKWRHLaegs---avslDMFEHISLMTLDSLQKCVFSYNSNCQEkmSDYISAIIELSA 238 human
Q99N16       154 AFHFNILkpYVKVFNDSTNIMHAKWQRLaskg---saylNMFEHISLMTLDSLQKCVFSFDSNCQEkpSEYITAILELST 230 house mouse
P51871       154 AFHFDILksYVKIFNKSVNTMHAKWQRLtakg---sarlDMFEHISLMTLDSLQKCIFSFDSNCQEsnSEYIAAILELSS 230 Norway rat
P51870       154 AFHFDILkpYVKIFNQSVNIMHAKWKHLcleg---sarlEMFENISLMTLDSLQKCLFGFDSNCQEspSEYISAILELSS 230 Norway rat
NP_001091388 162 AFHFDILknYVKIFNQSTDIMLAKWRRLaveg---pvslDMFEHVSLMTLDTLLKCTFSYDSDCQEkpSDYITAIYELSS 238 African clawed ...
XP_006002981 163 AFHFDILklYIKIFNQSTDTMHAKWRRMaaaaedgtvllDSFEHVSLMTLDSLLKCTFSHNSNCQEkpSEYIAAIYELST 242 coelacanth
XP_007908549 160 AFHFNILkpYVKTFSTSTNVLHEKWRRLlteg---atslEMFEHVSLMTLDSLLKCTFSFESNCQQesSEYIAAIYELSS 236 elephant shark
NP_001316566 142 AFHFDILksYVSIFNSSTHIMHTKWRAAakavg-gpvgrNMMEDLSLLTLDTLQKCIFSHDSHCQEqrSEYIEAILELST 220 chicken
Feature 1                                                                                        
P78329       231 LVSKRHHEillhidflYYLTPDGQRFRRACRLVHDFTDAVIQERRrtlpsqgv--ddflqakaKSKTLDFIDVLLLSKDE 308 human
Q3MID2       231 LVARRHQSlllhvdlfYHLTRDGMRFRKACRLVHDFTDAVIRERRctlpdqgg--ddalkakaKAKTLDFIDVLLLSKDE 308 Norway rat
Q6NT55       239 LSVRRQYRlhhyldfiYYRSADGRRFRQACDMVHHFTTEVIQERRralrqqga---eawlkakQGKTLDFIDVLLLARDE 315 human
Q99N16       231 LVARRHQRlllhvdlfYYLTHDGMRFRKACRLVHDFTDAVIRERRrtlldqgg--vdvlkakaKAKTLDFIDVLLLSKDE 308 house mouse
P51871       231 LIVKRQRQpflyldflYYLTADGRRFRKACDVVHNFTDAVIRERRstlntqgv--deflkaraKTKTLDFIDVLLLAKDE 308 Norway rat
P51870       231 LIIKRSQQlflyldflYYRTADGRRFRKACDLVHNFTDAVIRERRrllssqgtdeflesktksKSKTLDFIDVLLLAKDE 310 Norway rat
NP_001091388 239 LVVKREHYlphhfdfiYNLSSNGRKFRLACKKVHKFTAGVVQQRKkalqetga---eewikskQGKTKDFIDILLLSKDE 315 African clawed ...
XP_006002981 243 LVVKRENYlphhldcvYYLTSSGRRFQRACQIVHKFTSDVVQLRQttlreqgd---eawlkskQGKVMDFIDVLLLSKDE 319 coelacanth
XP_007908549 237 LVVARERClphhfnaiYWLSANGRRFRRACGLVHAYSLGVVQRRRealpgadm---pawhqakRGKVLDFLDILLLSKDE 313 elephant shark
NP_001316566 221 LVVRRQQRllhhtswlYRLSADGRRFARACATVHSFTANVVQRRRqelnhlgh---qawlkgrQGRSMDFIDLLLLTKDE 297 chicken
Feature 1                        #  ##  #                                                        
P78329       309 dgkkLSDEDIRAEADTFMFEGHDTTASGLSWVLYHLAKHPEYQERCRQEVQELLKdrepkeiEWDDLAHLPFLTMCMKES 388 human
Q3MID2       309 hgeaLSDEDIRAEADTFMFGGHDTTASGLSWILYNLAKHPEYQERCRQEVRELLRdrepeeiEWDDLAQLPFLTMCIKES 388 Norway rat
Q6NT55       316 dgkeLSDEDIRAEADTFMFEGHDTTSSGISWMLFNLAKYPEYQEKCREEIQEVMKgreleelEWDDLTQLPFTTMCIKES 395 human
Q99N16       309 hgkaLSDEDIRAEADTFMFGGHDTTASGLSWILYNLARHPEYQERCRQEVRELLRdrepeeiEWDDLAQLPFLTMCIKES 388 house mouse
P51871       309 hgkgLSDVDIRAEADTFMFGGHDTTASALSWILYNLARHPEYQERCRQEVRELLRdrepeeiEWDDLAQLPFLTMCIKES 388 Norway rat
P51870       311 hgkeLSDEDIRAEADTFMFGGHDTTASALSWILYNLARHPEYQERCRQEVWELLRdrepeeiEWDDLAQLPFLTMCIKES 390 Norway rat
NP_001091388 316 dgnqLSDEDMRAEVDTFMFEGHDTTASGLSWILYNLARHPEYQEKCRKEITELLEgkdtkhlEWDELSQLPFTTMCIKES 395 African clawed ...
XP_006002981 320 egngLSDEDLMAEVDTFMFEGHDTTASGISWVLYNLACHPQYQDKCRDEITQLMQgketeelEWDELSQLPFITMCIKES 399 coelacanth
XP_007908549 314 egngLTDEEIQSEADTFMFEGHDTTASAISWALYNLARHPEYQEKCREEIAQLLKengsedlEWDHLSQMPFTTMCIKES 393 elephant shark
NP_001316566 298 dgntLSDEDISAEADTFMFEGHDTTASGLAWLLYNLAHHPHYQEQCRQEVRELLKgrnveeiEWEDLSLLPFTTMCIKES 377 chicken
Feature 1             ##  #                                                             ###   ###
P78329       389 LRLHPPVPVISRHVTQDIVLPDGRVIPKGIICLISVFGTHHNPavWPDPEVYDPFRFDPENikeRSPLAFIPFSAGPRNC 468 human
Q3MID2       389 LRLHPPATAISRCCTQDIMLPDGRVIPKGVICRISIFGTHHNPavWPDPEVYNPFRFDADNgkgRSPLAFIPFSAGPRNC 468 Norway rat
Q6NT55       396 LRQYPPVTLVSRQCTEDIKLPDGRIIPKGIICLVSIYGTHHNPtvWPDSKVYNPYRFDPDNpqqRSPLAYVPFSAGPRNC 475 human
Q99N16       389 LRLHPPVTAISRCCTQDIVLPDGRVIPKGVISRISIFGTHHNPavWPDPEVYDPFRFDADNvkgRSPLAFIPFSAGPRNC 468 house mouse
P51871       389 LRLHPPVLLISRCCSQDIVLPDGRVIPKGNICVISIFGVHHNPsvWPDPEVYNPFRFDPENpqkRSPLAFIPFSAGPRNC 468 Norway rat
P51870       391 LRLHPPAIDLLRRCTQDIVLPDGRVIPKGNICVISIFGIHHNPsvWPDPEVFDPFRFDSENrqkRSPLSFIPFSAGPRNC 470 Norway rat
NP_001091388 396 LRLYPPVTAISRRCTEDIKLPDGKVIPKGNSCLISIYGTHHNPevWPNPQVYDPYRFDPEKlqeRSAHAFVPFSAGPRNC 475 African clawed ...
XP_006002981 400 LRIHPPVTTIARRCTEDVKLPDGRVIPKGVICLISIYGTHHNSaiWDNPKVYNPYRFEPENsqnRSSYAFIPFSAGHRNC 479 coelacanth
XP_007908549 394 LRLHPAVTTVARSCTEDIRLPDGRIIPKGNICLISIYGTHHNPtvWPEPEVYNPDRFSPENsetRSSHAFVPFSTGPRNC 473 elephant shark
NP_001316566 378 LRLHPPVTAVSRRCTEDIAMRDGRVIPKEVICLMSIYGTHHNPdiWPEPQVYDPLRFSPENsqgRSPLAFIPFSAGPRNC 457 chicken
Feature 1        ##  ##   #                                      
P78329       469 IGQTFAMAEMKVVLALTLLRFRv-LPDHTEPRRKPELVLRAEGGLWLR 515 human
Q3MID2       469 IGQTFAMSEMKVALALTLLRFRv-LPDDKEPRRKPELILRAEGGLWLR 515 Norway rat
Q6NT55       476 IGQSFAMAELRVVVALTLLRFRlsVDRTRKVRRKPELILRTENGLWLK 523 human
Q99N16       469 IGQTFAMSEMKVALALTLLRFRv-LPDDKEPRRKPELILRAEGGLWLK 515 house mouse
P51871       469 IGQTFAMSEIKVALALTLLRFCv-LPDDKEPRRKPELILRAEGGLWLR 515 Norway rat
P51870       471 IGQTFAMNEMKVVVALTLLRFRv-LPDDKEPRRKPEIILRAEGGLWLR 517 Norway rat
NP_001091388 476 IGQNFAMAEMKIVLALTLYNFHvrLDETKPVRRKPELILRAENGLWLQ 523 African clawed frog
XP_006002981 480 IGQNFAMTEVKVVVALTLYRFRvmLDETKTIRRIAELILRAENGLWLK 527 coelacanth
XP_007908549 474 IGQNFAMAELKVAVALTLHRFRlkLEPTAVVRRKPELILRTERGIWLQ 521 elephant shark
NP_001316566 458 IGQSFAMAEMKVVAALTLARFAvrPDPARPVRRKSELILRAEDGLWLQ 505 chicken

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap