Conserved Protein Domain Family
MFS_SLC46A2_TSCOT

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cd17450: MFS_SLC46A2_TSCOT 
Solute carrier family 46 member 2, also called Thymic stromal cotransporter protein, of the Major Facilitator Superfamily of transporters
Solute carrier family 46 member 2 (SLC46A2) is also called thymic stromal cotransporter protein (TSCOT). It is a putative 12-transmembrane protein mainly expressed in the thymic cortex in a specific thymic epithelial cell (TEC) subpopulation. Polymorphisms in TSCOT are linked to cervical cancer in affected sib-pairs with high mean age at diagnosis. TSCOT belongs to the Eukaryotic Solute carrier 46 (SLC46)/Bacterial Tetracycline resistance (TetA) -like (SLC46/TetA-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.
Statistics
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PSSM-Id: 341008
Aligned: 6 rows
Threshold Bit Score: 548.583
Created: 6-Feb-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative
Feature 1:putative chemical substrate binding pocket [chemical binding site]
Evidence:
  • Comment:based on the structures of MFS transporters with bound substrates, substrate analogs, and/or inhibitors
  • Comment:since MFS proteins facilitate the transport of many different substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides, the residues involved in substrate binding may not be strictly conserved among superfamily members
  • Comment:the substrate binding site or translocation pore has access to both sides of the membrane in an alternating fashion through a conformational change of the MFS transporter

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  ##  ##  #                                                       #     
NP_149040     19 RTWVEPVVASSQVAASLYDAGLLLVVkasygtggssnhsaspsprgaledqqqrAISNFYIIYNLVVGLSPLLSAYGLGW 98  human
EMP33469       8 RTWVEPVVAGAQVASSFYDTGLLLVVknyynrtssts------pahtledlqqkAVSDFYIIYNLVLGLSPLLTAYGLTK 81  green sea turtle
XP_005993579   6 RGWIEPLVACAQLGSSFYDTGLLIVVrdyynatlapap----gngsghedalqrAISNFNMVYSLVLGLSPLLPAFLLAR 81  coelacanth
XP_002936740   5 RTWIEPVVAGAQVASSFYDTGLLMTVknyynqtinss-------nissdealqkAISNFYIVYNSIMGLGPLLSAYFLAK 77  tropical clawed...
XP_007890254   6 ISLIEPVVACSQIASALYDTALLMVVkelcnlnstl---------rgqehsyqgGVSHFYMIYNLVAGLTSLIFTCTLAR 76  elephant shark
XP_017213485   5 RKYIAPLVFSAQVASSFFDTALQMVVkercanat-------------dsdgqqkAITNFNMTYNMIAKFMPFLPAILLAK 71  zebrafish
Feature 1                                                        ## ###  #                     # 
NP_149040     99 LSDRYHrKISICMSLLGFLLSRLGlllkvlldwpvevLYGAAALNGLFGGFSAFWSGVMALgslgssegrrsvrlilIDL 178 human
EMP33469      82 LGDKKNrKLTICLPLLGYLVSRSLllllillewpievMYGAAALNGLTGGFTTYWAGVMALgslgssehrrslrlivIEL 161 green sea turtle
XP_005993579  82 LGDSRHrKIPLCVPLAGYIACRALlllvillqwpvevMFGAAALYGLTGGFSAYWAGVMAWaalassskgrsvrlitVEL 161 coelacanth
XP_002936740  78 ISDKINrKITICVPLTGYLISRMFllfvilwdwpievMFGSAALNGLTGWFTAYWAGVMAWaslasteskrsikliiIEL 157 tropical clawed...
XP_007890254  77 LGDRRSrKLTICVPLLGYLISRALllltillrlplevMFGAAALYGVSGGFTAYWTGIMAIasvtssegsratklitVEL 156 elephant shark
XP_017213485  72 VGDRGYrKVPIVVPLVGYFLSRGLllldvafdwplqvLYAVPVIHGLCGGFASYWAGVMALvsvssgeeersvsimmTEL 151 zebrafish
Feature 1         ##  #                                                                          
NP_149040    179 MLGLAGFCGSMASGHLFkqmaghsgqgLILTACSVSCASFALLYSLLVLKvpesvakpsqelpavdtvsgtvgtyr---- 254 human
EMP33469     162 TYGMAGFLGSIASGHIFvhshisyrqgTTLVACSIACYAFCFLYSVFVLKvpmpegtcpaslahskpkdidqpdsq---- 237 green sea turtle
XP_005993579 162 TYGLAGFVGSMASGHIFrfeis-hhggSVLAACSLALYVLCALYSVFVLKvpeekrevpgpqlspdacqgtaegsssen- 239 coelacanth
XP_002936740 158 VYGLAGFAGSLASGHIFvhininhhqgAILASCSLGCYVFCVLYSTFVLKipspetgcietnegttinetqkedse---- 233 tropical clawed...
XP_007890254 157 VYGLSGLLGSLASGHIFihfkishyqgAALVCLCLVLYTLSLLYSIFVLKvppeqsepgtlrnqqpdsrgfpepgpgdts 236 elephant shark
XP_017213485 152 VYGIAGFIGSLASGHLFalytvnlkqgVILSGSSVVLYLLCLLYAATFLRvgppavlgdrlerr---------------- 215 zebrafish
Feature 1                                                                             #  ##  ### 
NP_149040    255 ----------------------------------tldpdqldqqyavghppspgkakphkTTIALLFVGAIIYDLAVVGT 300 human
EMP33469     238 ----------------------------------lpedertagnsgsceneghgplapskLIIAMLFVGAVLYDLAVVGA 283 green sea turtle
XP_005993579 240 --------------------------------srllprgkvrsawsggqatanpsvpidlHTVVLLFAGAGLYELSVAGG 287 coelacanth
XP_002936740 234 -----------------------------------ytersrllgdkslqtlnqphqrttkFILISIFISVILYNIAAGGA 278 tropical clawed...
XP_007890254 237 qpsdgspsvrqspaetsncladsgqgypravdrtpwetsglpddqdntsspiassvsvdiVTLGLLLAGGVLFELAVTGG 316 elephant shark
XP_017213485 216 -----------------------------------------------esfgiinheardkINIALLFVSGILYDIAVAGG 248 zebrafish
Feature 1         #                            #   #                                             
NP_149040    301 VDVIPLfvlrepLGWNQVQVGYGMAAGYTIFITSFLGVLVFSRCF-RDTTMIMIGMVSFGSGALLLAFvketymfyiARA 379 human
EMP33469     284 MDVLPLfllkkpLSWGPVEIGYGNAAGYMIFITSFLGVFVFSKYL-RDTTMIIIGILSFSIGILIMAFvrqtflfyiARA 362 green sea turtle
XP_005993579 288 VDVLSVfvlkkpLGWGAVEVGYGNAAGSMIFITSFLGVFFFSKYM-KDTTMIMIGILSFSAGILVMAFvrwtfmfyiARA 366 coelacanth
XP_002936740 279 EDVINVfvlkkpLSWGPVDVGYGNAATYINYITSFLGVYVFSMCV-GDLGLIIIGMISFSCGILIMAFvqwtylyyvARA 357 tropical clawed...
XP_007890254 317 IDVLSIfvlkepLSWNAVWVGYGNAAGYCTFMTSYLGVRFFSRCL-KSTSLIVIGMVSFSSGILIMAFvkwtflffiARA 395 elephant shark
XP_017213485 249 MEMLAAyvlkepLNWGATLVGYGNAAGSLLFITSFLGVKMFTRLSlRDESMIMVGMVSFATGIYFMAFvtttpmyflARS 328 zebrafish
Feature 1           ##   #   #               #  ##  ##  #                                        
NP_149040    380 VMLFALIPVTTIRSAMSKLIKGssyGKVFVILQLSLALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFLAIIPISIV 459 human
EMP33469     363 IMLFALIPLPTIRSLLSKHVQGssyGKVFVLLQLSLVITGVATSTAYNKIYQRTLDWFSGFCFILSCVAGSLSIIPISCK 442 green sea turtle
XP_005993579 367 IMMFALIPLPTIRSIISKQVQGssyGKVFVLLQIALSLTGVCASLIFNKIYQATLDWFIGFCFILSCIIGLLSMIPIGLV 446 coelacanth
XP_002936740 358 VMMFSLIPTPIIRSLISKHVQEslyGKVFAVLQLAIGVVYVSSSAGLNKLYQATLDWYSGFCFLLFSTLGFLSAIPVIIA 437 tropical clawed...
XP_007890254 396 VMMFALIPLPTIRAVISKQIQCtsyGKMFAMLQILLTLTSIIASTLFIQIYRSTKDWFPGFCFCLSTIISCLSIIPIIFV 475 elephant shark
XP_017213485 329 VTLFALIPMPTIRSLLSKQVKGtsyGITFVMLQLSFKLASLATTPIYTKIYQATLDTFPGFVFILSSIFTVLSIVPISIV 408 zebrafish
Feature 1         
NP_149040    460 A 460 human
EMP33469     443 P 443 green sea turtle
XP_005993579 447 R 447 coelacanth
XP_002936740 438 A 438 tropical clawed frog
XP_007890254 476 V 476 elephant shark
XP_017213485 409 G 409 zebrafish

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