5Z1W


Conserved Protein Domain Family
PKD_channel

?
pfam08016: PKD_channel (this model, PSSM-Id:400395 is obsolete and has been replaced by 462341)
Click on image for an interactive view with Cn3D
Polycystin cation channel
This family contains the cation channel region of PKD1 and PKD2 proteins.
Statistics
?
PSSM-Id: 400395
Aligned: 11 rows
Threshold Bit Score: 421.368
Created: 20-Apr-2021
Updated: 29-Sep-2021
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
5Z1W_C   84 SFQTISSMSDFWDFAQGPLLDSLywtkwYNNQSlgrgshsfiyyeNLLLGAPRLRQLRVRNDs--cVVHEDFREDILn-- 159  house mouse
O08852 3703 AFLAITRSDEFWPWMSHVFLPYV-----HGNQS------------SPELGPPRLRQVRLQEA----FCPDPSSSEHM--- 3758 house mouse
Q95V80 2213 DYHLMNDFRSFLKWADSTLLPGL-----LSENRwgae-----kqsTLIGGGLRLRQVRVKPSs--cETHPLFVDLINd-- 2278 purple sea urchin
Q9VK95  404 GNYLKDDSDSI-----------------QANMSfhhlegrvflyeNLLLGPPRLRQIRVRKEs--cYVNDAFIRYFNt-- 462  fruit fly
Q9U1S7  121 AFGSCTSMDNIWDWLSQVLIPGIyw-teTSNSTdnenm---iyyeNRLLGEPRIRMLKVTNDs--cTVMKSFQREIKe-- 192  Caenorhabditis elegans
O35245  267 NFKTLSSMEDFWKFTEGSFLDGLywkaqTSNHTqadnrs-fifyeNLLLGVPRLRQLRVRNGs--cSIPQDLRDEIKe-- 341  house mouse
Q9Z0T6 1623 DLATVMKLGDIYTWLHGVFLPLL-----HNDPNptfl----pdssSKILGLPLVRQVRARPSnktcLLAKKFVQSSVage 1693 house mouse
Q8T8Z2  171 GLSQVYFIYQVHSYMKITLVEAF-----YAQKTngyegw-wameqWQKIGVVRLRQMRPVD------------------- 225  fruit fly
Q9VVZ8  167 GLLSVGDVPDIYFFVVSSLVLAF-----TDGKNtsggapwihaegTRLLGVVRLRQLRTES------------------- 222  fruit fly
Q9W4X5  171 GLQEVYFLNQLFDFIESTLVLAF-----NSNSTesgspgwahaeqSVLLGVMRLRQLRVSN------------------- 226  fruit fly
Q9NTG1 1750 DLATVTKLEDIYRWLNSVLLPLL-----HNDLNptfl----pessSKILGLPLMRQVRAKSSekmcLPAEKFVQNSIrre 1820 human
5Z1W_C  160 --CYDVYSPDKEDq-----------LPFGPQNGTAWTYHS-----------QNELg-------------GSSHWGRLTSY 202  house mouse
O08852 3759 --CSAAGSLSTSDygi-------gwQSVVQNGSETWAYSA-----------PDLL--------------GAWYWGYCAVY 3804 house mouse
Q95V80 2279 --CRALFTPESEDrelyn---aswsQPIVNMSALLNSSQT-----------VEEWslsnyspwhfypdkAVGMWGHATSL 2342 purple sea urchin
Q9VK95  463 --CYAAYSSGAEDr-----------KPMHKGSP----FRT-----------MHDLd-------------STPIWTVLAFY 501  fruit fly
Q9U1S7  193 --CFANYEEKLEDk-----------TMVGDGSVDAFIYAT-----------AKELe-------------NLKTVGTIASY 235  Caenorhabditis elegans
O35245  342 --CYDVYSVSSEDr-----------APFGPRNGTAWMYTS-----------EKELn-------------GSSHWGIIASY 384  house mouse
Q9Z0T6 1694 ihCHPQYGIDPEDtqhyssvwskagKQSTDKASHGFTYKP-----------PGKRw-------------VYHSYGVLNTY 1749 house mouse
Q8T8Z2  226 --CHIGLGKPEWDkktyapewrlpyHRMHYTEKFWRIYDPfvpaefepsflNGLLl-------------NYDHYGYLLNY 290  fruit fly
Q9VVZ8  223 --NRLGLSLPVFTerdfseswtlpyERVPYTDKYWPIYTPwlpsv--svarDNLLm-------------GINHVGHMFNY 285  fruit fly
Q9W4X5  227 --PQVGLGPPKFSdtyympdwqlpyRKLHYSDKYWRIYEPwipikmgfeflDALLm-------------NFDHVGSLNSY 291  fruit fly
Q9NTG1 1821 ihCHPKYGIDPEDtknysgfwnevdKQAIDESTNGFTYKP-----------QGTQw-------------LYYSYGLLHTY 1876 human
5Z1W_C  203 S-GGGYYL-DLP-GSRQASAEALQGLQEGLWLDRGTRVVFIDFSVYNANINLFCILRLVVEFPATGGTIPSWQIRTVKLI 279  house mouse
O08852 3805 D-SGGYIQ-ELG-LSLEESRARLGFLQLHNWLDSRSRAVFVELTRYSPAVGLHAAVTLRLEFPVAGHALAAFSVRPFALR 3881 house mouse
Q95V80 2343 P-SSGYIW-VLG-SMYEEAKDSLAEMVDARWLDARTRALFVEWTSYNANTNLFCVVTFLMETPASGGLLKLPEVQAVRLH 2419 purple sea urchin
Q9VK95  502 R-TGGYTV-NLD-YDKDRNVKIINDLKDIHWLDRGSRLCLVEFNLFNENTDIFQSIKLIAEIPPTGGVIPQAHLQTVKMY 578  fruit fly
Q9U1S7  236 G-GGGFVQ-RLPvAGSTEAQSAIATLKANRWIDRGSRAIIVDFALYNANINLFCVVKLLFELPASGGVITTPKLMTYDLL 313  Caenorhabditis elegans
O35245  385 S-GAGYYL-DLS-RTREETAAQLAGLRRNFWLDRGTRAAFIDFSVYNANINLFCVVRLLAEFPATGGVVPSWQFQPVKLI 461  house mouse
Q9Z0T6 1750 G-SGGYVFyFFPgQQMFNSTVRLKELEGKNWLDELTWAVIVELTTLNPDTSLMCSISVVFEVSPLGVVNSSLSVYSFSLA 1828 house mouse
Q8T8Z2  291 PeVAGYVV-LMM-STKINCLKQIEYLRDYSWLDKNTSALFIDLTMYNADANLFTLITLRVENSPFGIQLPRVHVDSVSML 368  fruit fly
Q9VVZ8  286 PeSKGYKV-LLS-DTRHKSLKIIDYLMKKNWLDANTTALFMDFSLYNADANTFTVCTLWVEKFPYQYPDGHTRIESHTFV 363  fruit fly
Q9W4X5  292 PeLAGYVS-LLA-RSAANSMKVIDYLSENHWLTLNTSAVFIDFTLYNVDVNLFSICTLRVEKTPFGGIVPDVQVDSAKLL 369  fruit fly
Q9NTG1 1877 G-SGGYALyFFPeQQRFNSTLRLKELQESNWLDEKTWAVVLELTTFNPDINLFCSISVIFEVSQLGVVNTSISLHSFSLA 1955 human
5Z1W_C  280 RYVNNWDFFIVGcEVVFCVFIFYYVVEEILEIHLHR-LRYLS-SVWniLDLVVILLSIVAVGFHIFRTLEVNRLMGKLL- 356  house mouse
O08852 3882 RLSTGLSLPLLT-SVCLLLFALYFSMAEVQTWRKDGcACTARpDTW--ARCLLVILTAATGLVRLAQLGIADRQWTHFVq 3958 house mouse
Q95V80 2420 RYAANYKLFVILcEILFVVALFFVMYREYVRYKPIGiRKYLS-DKWnlLEIAIIVNCIVSAGLYIYRYVITKQLFKQMR- 2497 purple sea urchin
Q9VK95  579 SFFTDRSMLMTViYIFWYIMVIYYTIYEITEIRKSGiKIYFC-SMLniLDCAILLGCYLALVYNIWHSFKVMSLTARA-- 655  fruit fly
Q9U1S7  314 TYQTSGGTRMMIfEGIFCGFILYFIFEELFAIGRHR-LHYLT-QFWnlVDVVLLGFSVATIILSVNRTKTGVNRVNSVI- 390  Caenorhabditis elegans
O35245  462 RYVTAFDFFLAAcEIIFCFFIIYYVVEEILEIRIHR-LSYFR-SFWncLDVVIVVLSVVAMVINIYRMSNAEGLLQFL-- 537  house mouse
Q9Z0T6 1829 DFNRKTSSEIYL-YAAILIFFCAYVVDEGYIIRQER-ASYIR-SVYnlLNFSLKCMFALLIVLFFWKYFLATKMVQLYL- 1904 house mouse
Q8T8Z2  369 GNVETRSNSELLiLFVYTVLVILFARGVFTKIWHH--PAAAH-EAWtmVDLAIYILNVFLTVLAIMRDIETDALLQIIEt 445  fruit fly
Q9VVZ8  364 EQLREFTKFGMLmVFVFVVTWLQFTKAFFLKVWYD--PRQLK-TLWvqVDAMIVALSLVVGMIMSVRDNLVQKMIKSVEi 440  fruit fly
Q9W4X5  370 ENVDQMPYTGLLaLLIYVLVFIQFAQTLAVKLWYE--PHLLK-SVWnkLDLFIFMVNVLVVVLVVLRESLVASMMKKVEg 446  fruit fly
Q9NTG1 1956 DFDRKASAEIYL-YVAILIFFLAYVVDEGCIIMQER-ASYVR-SVYnlLNFALKCIFTVLIVLFLRKHFLATGIIRFYL- 2031 human
5Z1W_C  357 QQPDTYADFEFLAFWQTQYNNMNAVNLFFAWIKIFKYISFNKTMTQLSSTLARCAKDILGFAIMFFIVFFAYAQLGYLLF 436  house mouse
O08852 3959 DHPRHFTSFDQVAQLGSVARGLAASLLFLLLVKAAQQLRFVRQWSVFGKTLCRALPELMGATLGLVLLGVAYAQMAILLI 4038 house mouse
Q95V80 2498 DESVRFVGFRTAATSDNALGYSLAVIIILSCVKFLYLLRLNPRMYLLTSVISDCYHEVIAFTFLIFILILSFAFPMTIMF 2577 purple sea urchin
Q9VK95  656 HSDVTYQSLDVLCFWNIIYVDMMAILAFLVWIKIFKFISFNKTLVQFTTTLKRCSKDLAGFSLMFGIVFLAYAQLGLLLF 735  fruit fly
Q9U1S7  391 ENGLTNAPFDDVTSSENSYLNIKACVVFVAWVKVFKFISVNKTMSQLSSTLTRSAKDIGGFAVMFAVFFFAFAQFGYLCF 470  Caenorhabditis elegans
O35245  538 EDQNSFPNFEHVAYWQIQFNNISAVMVFLVWIKLFKFINFNRTMSQLSTTMSRCAKDLFGFTIMFSIIFLAYAQLAYLVF 617  house mouse
Q9Z0T6 1905 ADPEAFIPFHAVSRVDHFMRIILAFLLFLTILKTLRYSRFFYNVRLAQKAIQAALPGICHTALVVSIYSFMYVAFGYLVF 1984 house mouse
Q8T8Z2  446 ATKGQYLDFQRPLRLHQMLFIVKGFLVCITTLRLWKVLQFASVFQHFTQTLFSAWRAVASLGVIILVVLMAIGITLAVPN 525  fruit fly
Q9VVZ8  441 AVVVDFLDFREPAQLAYLEDVVTGLAVALVTMRLWKVLQFSATFQLFTKTIAMAWDALLCTFVITVIFIIAIGIATVTIN 520  fruit fly
Q9W4X5  447 ASKMEFIDFRRPSRMHQLTTITIGFLICITTLRLWRVLQFASVFKLFTRTLYLAWSAVASTAIAIVIFLIGFCFAVVTIN 526  fruit fly
Q9NTG1 2032 SNPEDFIPFHAVSQVDHIMRIILGFLLFLTILKTLRYSRFFYDVRLAQRAIQAALPGICHMAFVVSVYFFVYMAFGYLVF 2111 human
5Z1W_C  437 GTQVENFSTFVKCIFTQ-----FRIILGDFDYNaidn------anriLGPVYFVTYVFFVFFVLLNMFLAIINDTYSEV 504  house mouse
O08852 4039 SSGADTLYNMARAFLVLcpgarVPTLCPSESWY--------------LSPLLCVGLWALRVWGALRLGAILLRWRYHAL 4103 house mouse
Q95V80 2578 GSNLPDYRDITKTALNL-----FITLPDNFVYEdlks------vqrvLGPLILLLFQFLSCYLFLDLLIAALNESMVTI 2645 purple sea urchin
Q9VK95  736 GTKHPDFRNFITSILTM-----IRMILGDFQYNlieq------anrvLGPIYFLTYILLVFFILLNMFLAIIMETYNTV 803  fruit fly
Q9U1S7  471 GTQIADYSNLYNSAFAL-----LRLILGDFNFSales------cnrfFGPAFFIAYVFFVSFILLNMFLAIINDSYVEV 538  Caenorhabditis elegans
O35245  618 GTQVDDFSTFQECIFTQ-----FRIILGDINFAeiee------anrvLGPLYFTTFVFFMFFILLNMFLAIINDSYSEV 685  house mouse
Q9Z0T6 1985 GQHEWNYSNMIHATQTI-----FSYCVSAFQNTefsg-------nkvLGVLFLSSFMLVMICIFINLFQAVILSAYDEM 2051 house mouse
Q8T8Z2  526 GNNAVVFSHMVQSVVTC--------MWYSMGFNgdihpadffhggriLGILLYLALVFLLAIILMNVFASVIYDYFNET 596  fruit fly
Q9VVZ8  521 GNYTSNFRDFPKGIVTV--------TCFAFGYTnlvyppdifyggewLGILLYTIMGFVVKYMLINLIVSMMRDQMASV 591  fruit fly
Q9W4X5  527 GNYSSNFNKLVKSMVMC--------MCYSFGFSaqvkpselfhggkwLGILCYGVLAFVIIVLLINVFVSLINDYFTva 597  fruit fly
Q9NTG1 2112 GQHEWNYSNLIHSTQTV-----FSYCVSAFQNTefsn-------nriLGVLFLSSFMLVMICVLINLFQAVILSAYEEM 2178 human
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap