2KK0,4LJX


Conserved Protein Domain Family
ARID_ARID3A

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cd16878: ARID_ARID3A 
Click on image for an interactive view with Cn3D
ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 3A (ARID3A) and similar proteins
ARID3A, also called B-cell regulator of IgH transcription (Bright), dead ringer-like protein 1 (Dril1), or E2F-binding protein 1 (E2FBP1), is an ubiquitously expressed DNA-binding protein that has been implicated in embryonic patterning, cell lineage gene regulation, and cell cycle control, chromatin remodeling and transcriptional regulation. It was originally identified as a B cell-specific trans-activator of immunoglobulin heavy-chain (IgH) transcription, which increases immunoglobulin transcription in antigen-activated B cells and plays regulatory roles in hematopoiesis. It also functions as an E2F transcription regulator, inducing promyelocytic leukemia protein (PML) reduction and suppressing the formation of PML-nuclear bodies. It antagonizes the p16(INK4A)-Rb tumor suppressor machinery by regulating PML stability. ARID3A transcriptional activity can be modulated by SUMO (Small Ubiquitin-related Modifier) modification through the interaction with the SUMO-conjugating enzyme Ubc9. ARID3A also plays an important role in marginal zone B lymphocyte development and autoantibody production. Furthermore, ARID3A is a direct p53 target gene. It controls cell growth in a p53-dependent manner. ARID3A contains an AT-rich DNA-interacting domain (ARID, also known as BRIGHT), a SUMO-I conjugation (SUMO) motif and a multifunctional homomerization/nuclear export REKLES domain, which consists of two subdomains: a modestly conserved N-terminal REKLES alpha and a highly conserved (among ARID3 orthologous proteins) C-terminal REKLES beta.
Statistics
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PSSM-Id: 350642
Aligned: 7 rows
Threshold Bit Score: 254.987
Created: 12-Sep-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNA
Conserved site includes 21 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on the structure evidence that Drosophila melanogaster Dead Ringer (1KQQ) binds DNA through its ARID domain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                  #######                        # ##  #
2KK0_A        13 DHGDWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLvEVINKKLWREIT 92  human
4LJX_A         5 DHGDWTYEEQFKQLYELDGDPKRKEFLDDLFSFXQKRGTPVNRIPIXAKQVLDLFXLYVLVTEKGGLvEVINKKLWREIT 84  human
Q6GQD7       190 DHGDWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLvEVINKKLWREIT 269 African clawed ...
XP_005996394 213 DHGDWTYEEQFKQLYELDSDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLvEVINKKLWREIT 292 coelacanth
XP_007906480 206 DQTEWTYEEQFKQLYELDSDPRRKEFLDDLFTFMQKRGTPVNRIPIMAKQVLDLYMLYMLVTEKGGLvEVINKKLWREIT 285 elephant shark
XP_015155480 240 DHGDWTYEEQFKQLYELDGDPRRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYMLVTEKGGLvEVINKKIWREIT 319 Gallus gallus
XP_006639871 195 DHGDWTYEEQFRQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYQLVTEKGGLvEVINKKLWREIT 274 Lepisosteus ocu...
Feature 1               #### ### #                             ##     
2KK0_A        93 KGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRR 145 human
4LJX_A        85 KGLNLPTSITSAAFTLRTQYXEYLYPYECEKRGLSNPNELQAAIDSNRREGRR 137 human
Q6GQD7       270 KGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRR 322 African clawed frog
XP_005996394 293 KGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRR 345 coelacanth
XP_007906480 286 KGLSLPTSITSAAFTLRTQYMKYLYPYECEKRGLSSPNELQVAIDSNRREGRR 338 elephant shark
XP_015155480 320 KGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRR 372 Gallus gallus
XP_006639871 275 KGLNLPTSITSAAFTLRTQYMKYLYPYECDKRGLSNPNELQAAIDSNRREGRR 327 Lepisosteus oculatus

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