2YUJ,1ZC1


Conserved Protein Domain Family
UFD1

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pfam03152: UFD1 
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Ubiquitin fusion degradation protein UFD1
Post-translational ubiquitin-protein conjugates are recognized for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified. This family includes UFD1, a 40kD protein that is essential for vegetative cell viability. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterized by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation.
Statistics
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PSSM-Id: 460828
Aligned: 101 rows
Threshold Bit Score: 148.407
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2YUJ_A                    17 STQYRCFSVSMla-----gPndrsdvekGGKIIMPPSALDQLS------RL-NI--T-YPML--FKLTNK-NSDR---MT 75 
A0CHG3                    13 vEHLTVHSASSygrp---------qinnGNKILLPASALQQLI------FI-KQ--N-GPMI--FKIQST-QSQK---FT 67  Par...
A0DT94                     9 QNMLEVYSASTfqkk---------nlnqGNKILLPASALQQVL------HL-KQ--Q-GPMI--FRLQSTlDDKK---YT 64  Par...
A0CQS3                     6 CGTLEVYSASSqnkk---------iinhGNRILLPPSILLEIC------NV--Y--C-GTMT--FKLQSVlEEKK---SI 60  Par...
CAY67413                   1 --mseeysiyehlepellkDadgnvvkySDRVALPPSILESLVnqqqrlSIaSL--P-HPLI--FRLQa--EKSNsavNS 71 
Q8I3L7                    63 CQKFLTLPLNKksdk---------lkdhSDKIILPVSILKTLEkg---nYKnEV--E-FPYT--FSIKNV-QNNY---IT 121 Pla...
EDL43983                  62 CQKFLTLPLSAkpdr---------lnshSDKVILPVSILKTLEkg---fYRsEV--E-FPYT--FSLKNV-QNNY---IT 120
EJW01375                  13 plqwklkPLKFpkkd---------lrnyGGKCILPQIILAELF------EM-EI--P-TPYT--FEIS----HCGgvfKT 67 
WGS:AAFB:cds.EHI_055960A  12 pieVTCYPFMYmqtpqppqP--------TDKVVFPAYVLDELT------KQ-NPdfQ-APIL--FEVSNKsQTFKk--RI 71 
XP_001299964               3 sstlRVVPPGYydlp---------kleyTGRVMLPLEAIAQIH------N--NF--DnGPTIsvFCITNTrTKQK----V 59 
2YUJ_A                    76 HCGVLEFVADEGICYLPHWMMQNLLL---EeGGL--VQVE-SVNLQVATYSKFQPQSPDFL-DITNPKAVLENALR-NFA 147
A0CHG3                    68 YVGVLEFVAEEGSCIIPDWLFENMNF---FnRCW--VIVSlEQSLPLGKLIKIQPHETAFI-DLPDPRAILENQLR-NYI 140 Par...
A0DT94                    65 YVGVLEFTAEEGTCVVPDWMLESMGF---FdGCN--IIIShEKKLDQGKLIRIQPHETAFI-DLPDPRAILENHLR-NFI 137 Par...
A0CQS3                    61 YVGVLEFTADEGTCVVPDWIFDAMGF---SnGLS--IPINcNRINKFGSLIKVQPHKSAFI-KLSDPKDILKTYLK-NFT 133 Par...
CAY67413                  72 FVGVKEFTSQEGTILLPEFIYDKLVS---PdNNDstINITlASDIPKGTSIALKPL--ELYpEIKDWKYFLEAKLIkSYT 146
Q8I3L7                   122 HACVLEFSSNEGIIFVSDNIKENLGLnkpQnSSIarVLIT-YCILSKCDFIKLDSLNNNIN-DIKYMKNLLENELSlNYS 199 Pla...
EDL43983                 121 HVCVLEFSSNEGIIHVSENVKENLGIk--QsSGIvrLLVT-YANIPKCDFIKFESLNENTS-NIKFMKNLLQNELSlNYS 196
EJW01375                  68 NCGVLDFTAEDLTITVPEWMYQQLDL---AgTDK--ITLK-IVVLPKGRYVKLLPHSHEFL-DIENPKRELEKTLR-NYQ 139
WGS:AAFB:cds.EHI_055960A  72 VCGVESF-SSPDFTYFPQWILDYLHI---QpGDV--ATIF-KVLIPKGKSVTFKPLQSTFY-NIEDPKKTLESILR-NYM 142
XP_001299964              60 YAGMAPSDSRDGDIVMPLWMMDFLGA---NqGDM--VRVQ-SARPPNGRSATFQPLDSSFN-KISDPVTVLSKSLR-DFP 131
2YUJ_A                   148 CLTTGDVIAINYNEKI---------YELRVMETKP-DK---AVSIIECDMNVDFD 189
A0CHG3                   141 CLTQGETITITFNKIK---------YMIDIVSVTP-KTdklAVCINEADVEIDFL 185 Paramecium tetraurelia
A0DT94                   138 CLTEGETISINFHNTN---------YLIDIVKVEP-TNnlkAVCINEADVEIDFM 182 Paramecium tetraurelia
A0CQS3                   134 CLTQDETITINYQDVN---------YLIDIVKVEP-INkhnAICIDEFYFDIDLM 178 Paramecium tetraurelia
CAY67413                 147 TLSTNDTVCISEKDKV---------YKLLVEQAEP-TS---AICLIDTDIDLSIv 188
Q8I3L7                   200 TLTLGDYIHINH-------------LNFYISELEP-DN---AVSLINTDINVDIC 237 Plasmodium falciparum 3D7
EDL43983                 197 TLTLGDYVHINN-------------LSFYISELEP-DN---AVSLINTDITVDIC 234
EJW01375                 140 VLTQGDEILCNFEEGN---------MRFTVAEVKPaGL---GVYIVDTDLEVEFL 182
WGS:AAFB:cds.EHI_055960A 143 TLTLNTTITFQM-NTIidgmniatdVSVLISDVQP-FS---SIYIRETELVVEFE 192
XP_001299964             132 VLTQGSILPIDFAKRI---------YKLRVLKTEP-SD---GILINNVNLNTEFA 173
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