Conserved Protein Domain Family
RRM_NOL8

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cd12226: RRM_NOL8 
RNA recognition motif (RRM) found in nucleolar protein 8 (NOL8) and similar proteins
This model corresponds to the RRM of NOL8 (also termed Nop132) encoded by a novel NOL8 gene that is up-regulated in the majority of diffuse-type, but not intestinal-type, gastric cancers. Thus, NOL8 may be a good molecular target for treatment of diffuse-type gastric cancer. Also, NOL8 is a phosphorylated protein that contains an N-terminal RNA recognition motif (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), suggesting NOL8 is likely to function as a novel RNA-binding protein. It may be involved in regulation of gene expression at the post-transcriptional level or in ribosome biogenesis in cancer cells.
Statistics
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PSSM-Id: 409673
Aligned: 23 rows
Threshold Bit Score: 83.3948
Created: 18-Nov-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q76FK4          9 RLYVGGLsqd--isEADLQNQFSRFGev---sDVEIITRkddq--gnpqKVFAYINISva-eaDLKKCMSVLNkTKWKGG 80   human
Q9HFE6          6 RIYVGGLsss--ieSSDLESRFSRFGsv---sNLEIINKstpv---gtiQRFAYLNFRtd-edKWQKCKSYLSnATFKGS 76   fission yeast
XP_002175698    9 RVFIGGLset--irEEDLVPRLQRFGqt---sNFEIVEKkqpv---gtvHRFAYVDLEst-daNWVKCRTQLTnVVFRGS 79   Schizosacchar...
CAL52065       22 RLFVGGLapd--vtAADLRRRFAPFGev---lCVDLILDkcammgespcRGFAFVELRvsddvKLGRCISTLNrCTWRGR 96   Ostreococcus ...
EFN59108        3 RLFVGGLppg--vtPDDLRQRFLPFGev---tECSIAPAksygpgvvfpRNFGHVELQpkdeaALRKCIAAYNgCKWRGS 77   Chlorella var...
Q08287          8 RIFVGNIfhnaddcYSELLDRFGKFGdc---qDFQFEKH----------NHFAFIDIRfndeaDFNKLRKSFNnVKFKGN 74   Saccharomyces...
CCE78764       10 RIHIGNIsskiaadTSLLTRRISKFGtl--ldDIELHTKpl------gdHYFGYLTLRts-ekDLGKLKAALSgSVFMGG 80   Millerozyma f...
XP_445030       5 RLFIGNLkhgveecLADLEQRFKAFGeyvgsgQDVFERH----------NGFAFVTMRfedaeALQRLKSRFHkVKFKGN 74   Candida glabr...
XP_002493278    7 RIYIGNIsadlasdIGNLETRLKRYGtl--ekPLELHKKpl------ldSYFAYISLKls-dqNFAKLKGSLNgLNYKGS 77   Pichia pastor...
XP_500104       2 RLHISNLnpslkedSSDLVKRLNRFGst--tsELEVRQKpt------meTAYGFIDIDle-dkQLGQLKKALNnVRYKGN 72   Yarrowia lipo...
Q76FK4         81 TLQIQLAK 88   human
Q9HFE6         77 KLRIEEAR 84   fission yeast
XP_002175698   80 RLKLEEAK 87   Schizosaccharomyces japonicus yFS275
CAL52065       97 EMVVARAQ 104  Ostreococcus tauri
EFN59108       78 QLKCAPAH 85   Chlorella variabilis
Q08287         75 ILKVDEAK 82   Saccharomyces cerevisiae S288c
CCE78764       81 RLTISQAK 88   Millerozyma farinosa CBS 7064
XP_445030      75 QLIVDYAR 82   Candida glabrata CBS 138
XP_002493278   78 RVVVDMAR 85   Pichia pastoris GS115
XP_500104      73 VIGISQAK 80   Yarrowia lipolytica CLIB122
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