Conserved Protein Domain Family
RRM_RBM42

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cd12383: RRM_RBM42 
RNA recognition motif (RRM) found in RNA-binding protein 42 (RBM42) and similar proteins
This subfamily corresponds to the RRM of RBM42 which has been identified as a heterogeneous nuclear ribonucleoprotein K (hnRNP K)-binding protein. It also directly binds the 3' untranslated region of p21 mRNA that is one of the target mRNAs for hnRNP K. Both, hnRNP K and RBM42, are components of stress granules (SGs). Under nonstress conditions, RBM42 predominantly localizes within the nucleus and co-localizes with hnRNP K. Under stress conditions, hnRNP K and RBM42 form cytoplasmic foci where the SG marker TIAR localizes, and may play a role in the maintenance of cellular ATP level by protecting their target mRNAs. RBM42 contains an RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain).
Statistics
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PSSM-Id: 409817
Aligned: 29 rows
Threshold Bit Score: 142.033
Created: 13-Sep-2011
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9BTD8       375 EWDADDFRIFCGDLGNEVNDDILARAFSRFpSFLKAKVIRDKrtgKTKGYGFVSFKDPSDYVRAMREmNGKYVGSRPIKL 454 human
XP_001701759  20 EWPDNDFRIFVGDIGNEVTDDLLAKSFSKYsSFAKAKIVRDPrtkKSKGYGFVSFLDGQDFAKALREmNGKYIGNRPCKL 99  Chlamydomonas r...
XP_002781781  25 EWPSDDFRIFCGDLGNEVTDELLLSSFKQYsSLQMAKIVRDKrsgKSKGFGFLSFRDPEDMIKALKEmNHKYVGNRPITL 104 Perkinsus marin...
XP_002668753 261 EFSENDYRIYANNLGNEVTDQMLTTFFQSYpSFSKACVIRDKrtnRSKGFGFISFLDSNDYIHALENlNGKYLGNRPLQL 340 Naegleria grube...
EFN50925      46 EWPENDYRIFVGNLGNEVSDAVLTAAFQRFpTFQKAKVVRYAhngKSKGYGFVSFGDTIEGAKVLREmQGKYVGNRPVQL 125 Chlorella varia...
XP_654695     72 DWPTNDFRMFVGNLGKEVDDTMLKIFFSKYpSVQKVKVIINPytnKSKGYGFVSFSDPNEYLLALRTlNGKYIGTRPCKL 151 Entamoeba histo...
XP_001350312  44 EWPENDFRIFCGNLGNEVSSDILANAFRKYkSFNMAKVIRDKrnnKTKGYGFVSLSDPQDMLDALKTmNNKFIGNRPITV 123 Plasmodium falc...
EEY60449     199 EWPDNDFRLFCGDLGNEVSDELLAHSFSQYaSFQRARVVRDKlthKSRGYGFVSFADPFDCAKALREmNGKYIGNRPVKL 278 Phytophthora in...
EDQ89513     118 EWDPNDYRIFCGDLGNETSDEVLAKAFKHYpSFQKAKVIKDKasgKTKGYGFVSFKEGRDYLKALKEmQGKYIGNRPVKL 197 Monosiga brevic...
CAK66177      83 DWPDGDYRLFCGNLGNEVSDEVLANSFRKYpSFARSRVIRDKrtmKTRGYGFVSFLNANDYLKAFKEmNGKYVGNRPVKL 162 Paramecium tetr...
Q9BTD8       455 RKS 457 human
XP_001701759 100 SKS 102 Chlamydomonas reinhardtii
XP_002781781 105 KRS 107 Perkinsus marinus ATCC 50983
XP_002668753 341 KPS 343 Naegleria gruberi strain NEG-M
EFN50925     126 RKS 128 Chlorella variabilis
XP_654695    152 SKG 154 Entamoeba histolytica HM-1:IMSS
XP_001350312 124 KRS 126 Plasmodium falciparum 3D7
EEY60449     279 SKS 281 Phytophthora infestans T30-4
EDQ89513     198 SKS 200 Monosiga brevicollis MX1
CAK66177     163 SKS 165 Paramecium tetraurelia strain d4-2
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