3VP7


Conserved Protein Domain Family
APG6

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pfam04111: APG6 
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Apg6 BARA domain
In yeast, 15 Apg proteins coordinate the formation of autophagosomes. Autophagy is a bulk degradation process induced by starvation in eukaryotic cells. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway. This entry is the Beta-Alpha repeated, autophagy-specific (BARA) domain.
Statistics
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PSSM-Id: 461178
Aligned: 116 rows
Threshold Bit Score: 116.87
Created: 22-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3VP7_A         1 INIFNATFKISHS--GPFATINGLRLGSIPESVVPWKEINAALGQLILLLATINKNLKINLVDYELQP--MGSFSKI--- 73  Saccharomyces c...
Q22592       196 TNVLDLCFHIWVD--GIVGEINGFRLGYLKDAPVEFTEINAALGQIVLLLEILLERIGV--QHHELMPvaMGSHSYI--- 268 Caenorhabditis ...
XP_012655476 176 YNTINSVFFI--EvsEQVGLINNLMIGKKLNEDINWDETNAGLGQVILLFLYLMNKFGYQSSYIKDIQv-CGNESYIc-- 250
EGR28025     167 YNTLNQVFNI--QcdEQAGTINNIIIGKKLNQEIVWDETNAGLGQIAMLFSYLVKKYGYEMKFIKDINl-CANESQIc-- 241
XP_002140137 216 INIFNTTFYI--NqiNGIGTINNLRLGLLDNSDENWREINGALGYTSLLLCCIAEKLNI---EVTLNP--YGNYSTItdr 288
Q5CPI7       267 SDFLNLSFYI--QviEGGACINGLRPALFEADFDNWNEVNAALGVSAMLLYTILERHKL---PLSIYP--NGSYSTI--- 336 Cryptosporidium...
XP_001524202 355 FNIYKLMFDINLD--EKYGMINGLRIGY----KIVWPEVNAALGQISLLVAFILRRLHLKLEAYKLVP--MGSQSHI--- 423
XP_001387950 286 MNIYTKMFSIRFDeqDKYGSINGFRLGY----RIVEPEINAALGQIVMLLMFLTSRLNLKLRHYKLVP--MGSRSQI--- 356
EEQ40535     292 LNIYTKLFSISFE--DKWGRINGFRIGY----KVPWPEINVALGQIVQLITFLQKQLSVNLHSYELIP--LGSKSYI--- 360
EEY63744     299 LNILTDMFVIGYD--GAFGTINQFRMGQSAGSTLEWNEINAAFGECALLLQTLANMIGLEFPDFRIVP--LGSFSKV--- 371
3VP7_A        74 KKrmvnsveYNNSTTNapgdwliLPVYYD-ENFnlgriFRKETKFDKSLETTLEIISEITRQL---ST-----IAssyss 144 Saccharomyces c...
Q22592       269 -KlrrngidMET-----------YALYGQgTPLs------GSSGIDPGIRRFLQLLEFLLKEL---KD-----RNk---- 318 Caenorhabditis ...
XP_012655476 251 --------eANKSEQ--------LYLRGPfSNKg------DEAKFNRAMKMILDEFSLFVDYLqqtYL------------ 296
EGR28025     242 --------eIEKNQI--------LQLYGPlNYQs------EYSRFDQAIKLLLKEFYCFYEFLinqVKigdyvEEv---- 295
XP_002140137 289 CIpeylsnfVKEEYSI-------LPLYGNtSANsn---ynQCIKFDSAIKALLSNISNIAKYMncsDk------------ 346
Q5CPI7       337 ---------KDSESSI-------WPLHGNtLCNsd---ynECTNFDKGILSFVFLIDTVYNIIpgtNEt----------- 386 Cryptosporidium...
XP_001524202 424 VK--------FTKHEDgsrskkiLNLYSS-DEFtlgrlFN-FNKMDVSLIALLEILSIISIKL---RE-----LDt---- 481
XP_001387950 357 IK-------YSARERtt-----vLNLYSS-DEFslgklFN-FNKLDVSLITLLDVVAQVEARL---IQ-----IDp---- 410
EEQ40535     361 LKdvvgsndSTGNSPskn--hsvLPLFSS-NEFtlgklFN-FNKLDVSMMALLDIVSQLELRL---MN-----LDn---- 424
EEY63744     372 IR-------TSNLRME-------YSLHGS-DQQ-----NFAESHFNLGLGAWITCLGQLMAFV---RA-----RDp---- 419
3VP7_A       145 qtlttsqdessmnnandvenstsilE---LPYIMn--KD--KING-------LSVKLHGSSpN---LEWTTAMKFLLTNV 207 Saccharomyces c...
Q22592       319 -------------------------Nf-kPPYQI---HAdsLVDNgvkynavMTLNT-----D---VRWTRAMALMLTDL 361 Caenorhabditis ...
XP_012655476 297 -------------------------QniqLPFKId--QSnsSIDGl-----lLTTQTAANAqYkglDNWTQAFKKLLINF 344
EGR28025     296 ----------------------------kLPYNId--IQkcEIDY-------VEISIMKNI-----DLWTSGMKKFLINF 333
XP_002140137 347 -----------------------------LPFIIn--YDmnTIDG-------VSYNLLFND-K---QTWNNAMKMLLINL 384
Q5CPI7       387 -----------------------------LPYSVd--QRngTIGG-------ISLNLLFNEr----ESWNRAMSMNLINL 424 Cryptosporidium...
XP_001524202 482 -------------------------Di-eLPYKIk--ND--SIGG-------KSIRV---TsN---SEWTQSCKLLLTNL 518
XP_001387950 411 -------------------------Di-eLPYKIsphRD--SIGG-------RSIRV---TsK---SEWTQACKFLLTDL 449
EEQ40535     425 -------------------------El-eLPYKIsakHD--SVGG-------KSIRV---TsN---GQWTEACRYLLIDL 463
EEY63744     420 -------------------------Si-rLPYKV----AkhSIGG-------YSVLF-LKNkQ---KEWTKALKYALTNL 458
3VP7_A       208 KWLLAFSSN 216 Saccharomyces cerevisiae S288C
Q22592       362 KAACAQCDA 370 Caenorhabditis elegans
XP_012655476 345 KFLISFNAQ 353
EGR28025     334 KYIIYINEL 342
XP_002140137 385 KYLIINLCE 393
Q5CPI7       425 KWLLVRSSE 433 Cryptosporidium parvum
XP_001524202 519 NWMLIFVQA 527
XP_001387950 450 NWILSYTSV 458
EEQ40535     464 NWILAYVSA 472
EEY63744     459 KWLLTWVSA 467
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