2VRY,1OJ6


Conserved Protein Domain Family
Ngb

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cd08920: Ngb 
Click on image for an interactive view with Cn3D
Neuroglobins
The Ngb described in this subfamily is a hexacoordinated heme globin chiefly expressed in neurons of the brain and retina. In the human brain, it is highly expressed in the hypothalamus, amygdala, and in the pontine tegmental nuclei. It affords protection of brain neurons from ischemia and hypoxia. In rats, it plays a role in the neuroprotection of limb ischemic preconditioning (LIP). It plays roles as: a sensor of oxygen levels; a store or reservoir for oxygen; a facilitator for oxygen transport; a regulator of ROS; and a scavenger of nitric oxide. It also functions in the protection against apoptosis and in sleep regulation. This subgroup contains Ngb from mammalian and non-mammalian vertebrates, including fish, amphibians and reptiles; the functionally pentacoordinated acoelomorph Symsagittifera roscoffensis Ngb does not belong to this subgroup.
Statistics
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PSSM-Id: 271272
Aligned: 5 rows
Threshold Bit Score: 271.712
Created: 14-Jun-2010
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
heme binding
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:heme binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                      #         ##                     #  ##  #         
2VRY_A         4 MERPESELIRQSWRVVSRSPLEHGTVLFARLFALEPSLLPLFQYNgrqfSSPEDSLssPEFLDHIRKVMLVIDAAVTNVE 83  house mouse
1OJ6_A         1 MERPEPELIRQSWRAVSRSPLEHGTVLFARLFALEPDLLPLFQYNgrqfSSPEDSLssPEFLDHIRKVMLVIDAAVTNVE 80  human
ABS87379       6 LSRTQQALIRESWRRVSGSPVQHGVVLFSRLFDLDPDLLPLFQYNckrfASPQECLaaPEFLDHIRKVMLVIDAAVSHLE 85  chicken
Q90YJ2         4 LSEKDKGLIRDSWESLGKNKVPHGIVLFTRLFELDPALLTLFSYStn-cGDAPECLssPEFLEHVTKVMLVIDAAVSHLD 82  zebrafish
NP_001025522   6 LSGPQKELIRESWQTVSQDQLHHGTVLFSRLFELEPELVFLFQYNsshfSKVQDCLssAEFTEHIRKVMTVIDAAVSSLD 85  western clawed ...
Feature 1               #   #   #    #    #  #                                       
2VRY_A        84 DLSSLEEYLTSLGRKHRAVGVRLSSFSTVGESLLYMLEKSLGPDFTPATRTAWSRLYGAVVQAMSRGW 151 house mouse
1OJ6_A        81 DLSSLEEYLASLGRKHRAVGVKLSSFSTVGESLLYMLEKSLGPAFTPATRAAWSQLYGAVVQAMSRGW 148 human
ABS87379      86 DLPCLEEYLCNLGKKHQAVGVKVESFSTVGESLLYMLENCLGAAFSPDVREAWIELYGAVVKAMQRGW 153 chicken
Q90YJ2        83 DLHTLEDFLLNLGRKHQAVGVNTQSFALVGESLLYMLQSSLGPAYTTSLRQAWLTMYSIVVSAMTRGW 150 zebrafish
NP_001025522  86 CLSSLDEYLTSLGRKHRAVGVKLESFNTVGESLLFALESCLGDAFTSDTREAWSLLYANVVQSMSRGW 153 western clawed frog

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