Conserved Protein Domain Family
7tmA_PAFR

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cd15147: 7tmA_PAFR 
platelet-activating factor receptor, member of the class A family of seven-transmembrane G protein-coupled receptors
The platelet-activating factor receptor is a G(q/11)-protein coupled receptor, which is linked to p38 MAPK and PI3K signaling pathways. PAF is a phospholipid (1-0-alkyl-2-acetyl-sn-glycero-3-phosphorylcholine) which is synthesized by cells especially involved in host defense such as platelets, macrophages, neutrophils, and monocytes. PAF is well-known for its ability to induce platelet aggregation and anaphylaxis, and also plays important roles in allergy, asthma, and inflammatory responses, among many others.
Statistics
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PSSM-Id: 320275
Aligned: 8 rows
Threshold Bit Score: 468.462
Created: 18-Nov-2008
Updated: 25-Oct-2021
Structure
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Aligned Rows:
  next features
Feature 1:putative ligand binding pocket [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                 #  ##            ######
P25105        16 TLFPIVYSIIFVLGVIANGYVLWVFARLYPckkfnEIKIFMVNLTMADMLFLITLPLWIVYYQnqGNWILPkflCNVAGC 95  human
CAG10424      16 DLFPSAYGVIFILGLLANLYVLFILRCLQEaramgEIRIYMTNLSIADLLFVCALPFWIGYYSrhGNWVYTdfmCRLTGS 95  spotted green p...
P21556        16 TLFPIVYSIIFVLGIIANGYVLWVFARLYPskklnEIKIFMVNLTVADLLFLITLPLWIVYYSnqGNWFLPkflCNLAGC 95  domestic guinea...
NP_001079640  26 SLFTVTYSIIFVFGFIANCYVLWIFGRVYPaknlsEIKIFMINLTIADLLFLVTLPLWIVYYHyeGDWFMPsflCNVAGC 105 African clawed ...
XP_001342372  26 TLFPIFYGVVFVLGLIANCYALYVLHRMREskamnEIRIYMTNLTVADLLFVSALPFWIDYYMheGHWRSTeafCRITGT 105 zebrafish
Q62035        16 TLFPIVYSVIFILGVVANGYVLWVFANLYPskklnEIKIFMVNLTMADLLFLITLPLWIVYYYneGDWILPnflCNVAGC 95  house mouse
EMC78680      28 NLFTVFYSIIFILGFAANCYVLWIFSRIYPtkklnEIKIFMVNLTVADLLFLVTMPMWIVYYHhhGDWIMPkflCNVAGC 107 domestic pigeon
AFK10789      31 ILFPVVYSIIFLLGLMGNCYVLWVFKHLSMsrninEVKTFMVNLSIADLLFILTLPFWIVYYCglGNWVFPeffCRMVGC 110 ghost shark
Feature 1         ##  #                                            # #####                       
P25105        96 LFFINTYCSVAFLGVITYNRFQAVTRPikTAQANtrKRGISLSLVIWVAIVGAASYFLIldstntvpdsagsgnvTRCFE 175 human
CAG10424      96 LFFINTYCSVLFLGAISVNRYWAVTRPldTASSDhrLRGIIISVIIWVLTISMAIPYLVspatnt-----denlvVRCFE 170 spotted green p...
P21556        96 LFFINTYCSVAFLGVITYNRFQAVKYPikTAQATtrKRGIALSLVIWVAIVAAASYFLVmdstnvvsnkagsgniTRCFE 175 domestic guinea...
NP_001079640 106 FFFLNTYCSVAFLGVISYNRFQAVTRPveTAQSTarIRGICISVAVWILLFASSLYFLIfpgtniv--nidgknfTRCFE 183 African clawed ...
XP_001342372 106 FFFINTYGSILFLTVISINRYWAVTKPlkAASSDcwKRGAIISVLIWAFILSASIPQLTkegiqke--qrmnrsmQRCFE 183 zebrafish
Q62035        96 LFFINTYCSVAFLGVITYNRYQAVAYPikTAQATtrKRGISLSLIIWVSIVATASYFLAtdstnlvpnkdgsgniTRCFE 175 house mouse
EMC78680     108 LFFVNTYSSVAFLMVITYNRYQAVTNPikAAQFTtqRRGIYLSAAIWIIIVGSSLYYLFddntnee--kidsknfTRCFE 185 domestic pigeon
AFK10789     111 LFLINTYCSIAFLAAISYNRYCAVARPieSIQQSgrKRGMIVSFAIWFIILCSASPFLFmkstn------qvgtqTHCFE 184 ghost shark
Feature 1                   #  ### ### ##                                                        
P25105       176 HYekg----svPVLIIHIFIVFSFFLVFLIILFCNLVIIRTLlmqpvq------------qqrnaEVKRRALWMVCTVLA 239 human
CAG10424     171 GYqnqtdsekkTVAATHFAIIGLFFVVFALVLVCNLLIAQALlssnakslqhtgssrstssqrprGVKRRALQMLLAVVG 250 spotted green p...
P21556       176 HYekg----skPVLIIHICIVLGFFIVFLLILFCNLVIIHTLlrqpvk------------qqrnaEVRRRALWMVCTVLA 239 domestic guinea...
NP_001079640 184 GYsid---nrePVAVIHFILVGAFFVVFLIILTCNLVIARTLlyqpvk------------srkssDMKHRALWMVVTVLA 248 African clawed ...
XP_001342372 184 GYhytdentknVLVITHFSIIGLFFLVFLMVIICNISIARALlsqpisqpr------astgrrpgGTKRRALRMLCAVIG 257 zebrafish
Q62035       176 HYepy----svPILVVHVFIAFCFFLVFFLIFYCNLVIIHTLltqpmr------------qqrkaGVKRRALWMVCTVLA 239 house mouse
EMC78680     186 RYdssg--nvsAVLAIHVIICVLFYIIFFFILGWNVIIIRTLfskpaq------------prrsaHVKQRALWMVCTVLA 251 domestic pigeon
AFK10789     185 GYdrd---ssmAVMISNFVLITAFFFAFLVIVVCNLHILRLLstqtiq-----------pgntnhSVKQQAFRMVCAVMV 250 ghost shark
Feature 1             #  ## ##  #                       ## ###  #  ##                     
P25105       240 VFIICFVPHHVVQLPWTLaelgfqd--------skfhqaINDAHQVTLCLLSTNCVLDPVIYCFLTkKFRKHL 304 human
CAG10424     251 VFVVCFLPHHVIQGAWTLavlqikqgwghvdwsqgtrqaLNDAHQITLLLMGLNCILDPVVYCFATkKFRRYI 323 spotted green pufferfish
P21556       240 VFVICFVPHHMVQLPWTLaelgmwp--------ssnhqaINDAHQVTLCLLSTNCVLDPVIYCFLTkKFRKHL 304 domestic guinea pig
NP_001079640 249 VFVLCFVPHHIVDGPWTLtvlrmwhe-----tdcdfrkmLNNVHQITLCLMSTNCMLDPIIYCFLTkKFRKHL 316 African clawed frog
XP_001342372 258 VFVICFLPHHVVQGPWVLsvlqlkky-----wstwthqtLNDAHQITLMLMGINCLLDPLVYCFATtKFRKYL 325 zebrafish
Q62035       240 VFIICFVPHHVVQLPWTLaelgyq---------tnfhqaINDAHQITLCLLSTNCVLDPVIYCFLTkKFRKHL 303 house mouse
EMC78680     252 VFIISFVPHHIVHLPWTLtvleqwrk-----edcqlrqqLNDAHQVTLCLLSMNCVLDPIIYCFLTkKFQKHL 319 domestic pigeon
AFK10789     251 VFSLCFLPHHVVQGPWTLtvleqwrv-----ddcqfrqaVNDAHQVTLCLMSLNCALDPIIYCFLTkKFRRFL 318 ghost shark

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