1IG6


Conserved Protein Domain Family
ARID_ARID5

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cd16869: ARID_ARID5 
Click on image for an interactive view with Cn3D
ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing proteins ARID5A, ARID5B, and similar proteins
This subfamily contains ARID5A and its paralog ARID5B. ARID5A, also called modulator recognition factor 1 (MRF-1), is an estrogen receptor alpha (ER alpha)-interacting protein that is expressed abundantly in cardiovascular tissues and suppresses ER alpha-induced transactivation. It also plays an important role in the promotion of inflammatory processes and autoimmune diseases. ARID5B, also called MRF1-like protein or modulator recognition factor 2 (MRF-2), is a DNA-binding protein that directly interacts with plant homeodomain (PHD) finger 2 (PHF2) to form a protein kinase A (PKA)-dependent PHF2-ARID5B histone H3K9Me2 demethylase complex. It also functions as a transcriptional co-regulator for the transcription factor sex determining region Y (SRY)-box protein 9 (Sox9) and promotes chondrogenesis through histone modification. Moreover, ARID5B is highly expressed in the cardiovascular system and may play essential roles in the phenotypic change of smooth muscle cells (SMCs) through its regulation of SMC differentiation. Both ARID5A and ARID5B contain an AT-rich DNA-interacting domain (ARID, also known as BRIGHT).
Statistics
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PSSM-Id: 350633
Aligned: 16 rows
Threshold Bit Score: 158.226
Created: 11-Sep-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNA
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on the structure evidence that Drosophila melanogaster Dead Ringer (1KQQ) binds DNA through its ARID domain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                              #######                        # ##  #          # ### #    
1IG6_A          3 DEQAFLVALYKYMKERktPIERIPYLGFKQINLWTMFQAAQKLGGYEtitARRQWKHIYDELGGnpgsTSAATCTRRHYE 82   human
XP_005097516  322 EEQAFLFGLHKFMHDAkmPIGRIPSLGFKQIDLYYFYKQAEKLGGYDmitTKRMWKHLYDKLGGnssnTSAATCTRRHYE 401  California se...
XP_001641304    1 DERYFMRLLREFMKSRetPISKIPALGFKRVNLWTMYNTTQRLGGYEmvtSKRLWRQVYDALGGsttiTSAATYTRRHYE 80   starlet sea a...
ELU13731      348 EEREFLEKLFAFMRNYhrPIERLPTLGFKEVDLYLFYGYAQRFGGYEqvtQNRQWKQIYDMLGGnpnnTSAATCTRRIYE 427  Capitella sp....
XP_009859435  640 SQSAFLELLYQFMRKRntPIGRIPSLGFKKLDLWTFFKLSQEYGGYDmvtAKRLWKHVYDRMGGnpscTSAATCTRKHFE 719  vase tunicate
XP_014279747  301 DERNFMSALHIFMKDRktPISRIPVVGFKEVNLYKFFKKVTDLGGYDvvtAGKLWKYVYEVMGGdmtsTSAATLSRRHYE 380  brown marmora...
XP_013419272  301 AEADFLAALYKFMRNRqsPITKVPSLGFKTIDLYYFYSSAQKYGGYEqitNKRLWKHLYDKLGGnpgsTSAATCTRRHYE 380  Lingula anatina
KZS10857      231 GEQVFMQKLHKFMAGQgtPIGRLPSLGFKQLDLFLFYTKVQRAGGYEaavANKQWKGIYIELGGhpsnTSAATCTRRHYE 310  Daphnia magna
KPM10437      221 CRKKFLNELKQFMKKRgtPIQRIPILGAKKLDLHTFFNRVVKFGGYEettKQRLWKKLYIDLSGdrsiTSAATCARRHYE 300  Sarcoptes sca...
XP_011672594  179 SEELFLTHLYKYMKDRntPIDRVPHLGFKQLDLFAFFELAVKLGGYRsitSQKQWKVIYDQLGGnpnsTSAATCTRKHYE 258  purple sea ur...
Feature 1                
1IG6_A         83 RLILPYE 89   human
XP_005097516  402 RLLLPYE 408  California sea hare
XP_001641304   81 RLLLPYE 87   starlet sea anemone
ELU13731      428 KLLLPFE 434  Capitella sp. I Grassle & Grassle, 1976
XP_009859435  720 KLLLPLE 726  vase tunicate
XP_014279747  381 KLLLPYE 387  brown marmorated stink bug
XP_013419272  381 KLLLPFE 387  Lingula anatina
KZS10857      311 KLLLPYE 317  Daphnia magna
KPM10437      301 KLLLPFE 307  Sarcoptes scabiei
XP_011672594  259 RLLFPFE 265  purple sea urchin

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