1HDR,1DIR,1OOE


Conserved Protein Domain Family
DHPR_SDR_c_like

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cd05334: DHPR_SDR_c_like 
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dihydropteridine reductase (DHPR), classical (c) SDRs
Dihydropteridine reductase is an NAD-binding protein related to the SDRs. It converts dihydrobiopterin into tetrahydrobiopterin, a cofactor necessary in catecholamines synthesis. Dihydropteridine reductase has the YXXXK of these tyrosine-dependent oxidoreductases, but lacks the typical upstream Asn and Ser catalytic residues. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.
Statistics
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PSSM-Id: 187595
Aligned: 16 rows
Threshold Bit Score: 229.133
Created: 7-Apr-2005
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1HDR_A        10 ARRVLVYGGRGALGSRCVQAFRARNw--WVASVDVVENEEAs--------aSIIVKMtds--ftEQADQVTAEVGkll-- 75  human
1OOE_A         3 SGKVIVYGGKGALGSAILEFFKKNGy--TVLNIDLSANDQAd--------sNILVDGnkn--wtEQEQSILEQTAssl-- 68  nematode
AAX25766       4 CKRVVLYGGRGSLGSICVQHFKSRGy--WVCSIDFQENSDAd--------vNIIVGAsen--csTQEKVVKNSLDtfl-- 69  Schistosoma jap...
AAX52751       3 AGRVVIYGGKGALGSACVDHFKANNy--WVGSIDLTENEKAd--------vSIVVPRdas--wvEQEETVVSKVGesl-- 68  fruit fly
CAJ08172       1 MKNVLLIGARGALGRAVANAFANGKw--SIISVDQAAAVQQgd-------eCCAVNPas---siEELQQAYKSAVtg--- 65  Leishmania major
XP_001020643   4 QRTLLVIGGCGNLGRSVISKFKSNW---NIASIGLNINNESn--------kNIILPQn------QSASQYVSEVKqqlks 66  Tetrahymena the...
Q86A17         2 SKNILVLGGSGALGAEVVKFFKSKSw--NTISIDFRENPNAd--------hSFTIKDsg----eEEIKSVIEKINsk--- 64  Dictyostelium d...
NP_770804      3 GKVLIVTGALGALGKVVAEIAQSRGa--RIAGIDYAPSQVPat------peRIEIGGvdl-sdaAQAKTAVDAAAkh--- 70  Bradyrhizobium ...
NP_487845     23 GRQVLLTGGTGGLGLGVTPVVLAQGanlTITYRNLKEVERLkevlppadfaRVNFLPan----lEEESSVDNLITri--- 95  Nostoc sp. PCC ...
AAD21069      17 ARVIVVTGGFGVLGTALGQYLSGRGa--RVALLDRAETSQTrvs----ddaNVLALGgvdltsvESARSAFAQVAeh--- 87  Pseudomonas abi...
Feature 1                                                                                     #  
1HDR_A        76 geeKVDAILCVAGGWAGGNAKSKsLFKNCDLMWKQSIWTSTISSHLATKHLk--eGGLLTLAGAKAAL-DGTPGMIGYGM 152 human
1OOE_A        69 qgsQVDGVFCVAGGWAGGSASSKdFVKNADLMIKQSVWSSAIAAKLATTHLk--pGGLLQLTGAAAAM-GPTPSMIGYGM 145 nematode
AAX25766      70 ssqKVDGIFCVAGGWVGGNAASQdFLENCDTIWKKCVWSSSIAASLASKYLs--sSGLLVLTGAQAAL-QATPTMLGYGM 146 Schistosoma jap...
AAX52751      69 ageKLDAVICVAGGWAGGNAKKD-LAKNADLMWKQSVLTSAISAAVAAQHLk--aGGLLALTGAKPAL-EGTPGMIGYGM 144 fruit fly
CAJ08172      66 --lKVDAVINVAGGWAGGSVADTsTAASTELMLRQSLFSSVAAAHVFSTQGe--kNGLLLLTGAAAAV-SPTPGMIGYGT 140 Leishmania major
XP_001020643  67 fspSYDAIICVAGGWNGGSIKDSnVFETYHKMHSVNVIPSILAAHLSTHFLr--kNGLLVFTGAGGIInNPCHDMIGYGL 144 Tetrahymena the...
Q86A17        65 -siKVDTFVCAAGGWSGGNASSDeFLKSVKGMIDMNLYSAFASAHIGAKLLn--qGGLFVLTGASAAL-NRTSGMIAYGA 140 Dictyostelium d...
NP_770804     71 -fgRLDALINIAGGFAFETVGDG-DTKTWQRMYALNVLTALNASRAALPHLaassAGRIINIGAMGAL-QAGNGMGPYAA 147 Bradyrhizobium ...
NP_487845     96 --gRVDVLIHLVGGFSMGKTHEY-SYYSWKREFEINLNTTFLVCKYSLKSMldhgYGRIITIGSKAAV-EPSGGLAAYSA 171 Nostoc sp. PCC ...
AAD21069      88 -fgRIDGLVNVAGGFAWETLESG-SLATWDHLYQMNLRTAVIASQAVLEHLlahdGGRIVNIGAQASL-KAGMGMGAYAA 164 Pseudomonas abi...
Feature 1         #                                                                              
1HDR_A       153 AKGAVHQLCQSLAGKNSGmppgAAAIAVLPVTLDTPMNRKSMPEADFSSWTPLEFLVETFHDWITgk-nRPSSGSLIQVV 231 human
1OOE_A       146 AKAAVHHLTSSLAAKDSGlpdnSAVLTIMPVTLDTPMNRKWMPNADHSSWTPLSFISEHLLKWTTetssRPSSGALLKIT 225 nematode
AAX25766     147 AKAAVHQLTKSLGGQNSGlpngSCVLAISPATLDTPMNRKWMPKANHSSWTPTEKVAELFTTWLEeasnRPKSGSIIQLI 226 Schistosoma jap...
AAX52751     145 AKAAVHQLTRSLGAEKSGlpagSLAVSILPVTLDTPMNRKWMPDADFGTWTPLTEVAGLFLKWTQdq-eRPKTGSLLQLI 223 fruit fly
CAJ08172     141 AKSAVHFLCQSIAEDPSVlptdASVLAILPTILDTPGNRSAMPHADRSTWTSLEDVAQQIVEWSNgs-rRPASGSLVKIV 219 Leishmania major
XP_001020643 145 SKVAVHSLASTMAVSKDMpe-gSTVVTILPKVIDTPQNREAMPDSDFSTWAKPEQISGLLKMWAEgn-nLPKTGSFAMLN 222 Tetrahymena the...
Q86A17       141 TKAATHHIIKDLASENGGlpagSTSLGILPVTLDTPTNRKYMSDANFDDWTPLSEVAEKLFEWSTnsdsRPTNGSLVKFE 220 Dictyostelium d...
NP_770804    148 SKAGVHRLTEALASEWKGk---VTVNAVLPSIIDTTANRADMPKADFTKWVTPQELAEVILFLASda-aSGVTGALIPVG 223 Bradyrhizobium ...
NP_487845    172 AKAGVVAFTKAIADETKGt--nITANVILPTVIDTPANRQAMGTENADKWVKPESIGELICFLASek-aKDIRGAAIPIY 248 Nostoc sp. PCC ...
AAD21069     165 SKAGVSRLTEALAEELKDr--gITVNAVLPSIIDTPTNRTDMPDADFSRWVRPTQLASVIAFLLCdd-aDAVTGACLPVS 241 Pseudomonas abi...
Feature 1         
1HDR_A       232 T 232 human
1OOE_A       226 T 226 nematode
AAX25766     227 T 227 Schistosoma japonicum
AAX52751     224 T 224 fruit fly
CAJ08172     220 T 220 Leishmania major
XP_001020643 223 V 223 Tetrahymena thermophila SB210
Q86A17       221 T 221 Dictyostelium discoideum AX4
NP_770804    224 G 224 Bradyrhizobium japonicum USDA 110
NP_487845    249 G 249 Nostoc sp. PCC 7120
AAD21069     242 G 242 Pseudomonas abietaniphila

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