Uncultivated Alcanivorax sp. UBA4485 genome recove... - BioSample - NCBI

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Uncultivated Alcanivorax sp. UBA4485 genome recovered from SRX621521

Identifiers: BioSample: SAMN06456368; Sample name: Alcanivorax sp. UBA4485; SRA: SRS2034369

Organism: Alcanivorax sp. UBA4485
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax; unclassified Alcanivorax

Package: Microbe; version 1.0

Attributes

collection date	not applicable
geographic location	USA: Washington, DC
isolate	UBA4485
isolation source	Biofilm grown on the Cathode of a Microbial Fuel Cell (Biofilm MCL)
metagenome source	biofilm metagenome
sample type	metagenomic assembly
subsource note	Genome binned from sequencing reads available in SRX621521 metagenome
assembly_method	CLC de novo assembler
assembly_method_version	4.4.1
completeness_estimated	90.78%
contamination_estimated	1.91%
environmental_sample	true
genome_coverage	223.51
mapping_method	BWA (BWA-MEM)
mapping_method_version	0.7.12-r1039
metagenomic	true
quality_assessment_method	CheckM
quality_assessment_method_version	1.0.6
value	This BioSample is a metagenomic assembly obtained from the biofilm metagenome reads: SRR1450398.

Description: Uncultivated genome recovered from an assembly of the SRX621521 metagenome.

BioProject: PRJNA348753 metagenomes
Retrieve all samples from this project

Submission: University of Queensland, Donovan Parks; 2017-02-27

Accession:: SAMN06456368
ID:: 6456368

BioProject SRA Nucleotide

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Uncultivated Alcanivorax sp. UBA4485 genome recovered from SRX621521
Uncultivated Alcanivorax sp. UBA4485 genome recovered from SRX621521

biosample
histone deacetylase complex subunit SAP18 [Mus musculus]
histone deacetylase complex subunit SAP18 [Mus musculus]
gi|215490074|ref|NP_033145.2|

Protein
ankyrin repeat family A protein 2 isoform X3 [Oryctolagus cuniculus]
ankyrin repeat family A protein 2 isoform X3 [Oryctolagus cuniculus]
gi|655882545|ref|XP_008272760.1|

Protein
PREDICTED: Mus musculus CCCTC-binding factor (Ctcf), transcript variant X7, mRNA
PREDICTED: Mus musculus CCCTC-binding factor (Ctcf), transcript variant X7, mRNA
gi|1907186961|ref|XM_030243283.2|

Nucleotide
Taxonomy Links for Nucleotide (Select 2217340132) (1)
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