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Links from Protein

Accession: PRJNA36595 ID: 36595

Thalassiosira oceanica CCMP1005

Thalassiosira oceanica CCMP1005 Whole Genome Shotgun Assembly

See Genome Information for Thalassiosira oceanica
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This project is a component of the Thalassiosira oceanica CCMP1005
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5 additional projects are related by organism.
1 additional project is a component of the Thalassiosira oceanica CCMP1005.
The diatom Thalassiosira oceanica is an important oceanic primary producer that is adapted to chronic limitation of the essential nutrient iron. More...
AccessionPRJNA36595
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismThalassiosira oceanica CCMP1005[Taxonomy ID: 637379]
Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira; Thalassiosira oceanica; Thalassiosira oceanica CCMP1005
Publications
  • Lommer M et al., "Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation.", Genome Biol, 2012 Jul 26;13(7):R66
  • Lommer M et al., "Recent transfer of an iron-regulated gene from the plastid to the nuclear genome in an oceanic diatom adapted to chronic iron limitation.", BMC Genomics, 2010 Dec 20;11:718
Grants
  • "Cluster of Excellence 'The Future Ocean'" (Grant ID EXC80, Deutsche Forschungsgemeinschaft)
  • "The photosynthetic response to iron limitation and iron resupply in diatoms" (Grant ID RO2138/6-1, Deutsche Forschungsgemeinschaft)
SubmissionRegistration date: 25-Jul-2012
DFG Cluster of Excellence 'Future Ocean'
- Institute of Clinical Molecular Biology ICMB, Christian-Albrechts-University Kiel, Kiel, Germany
RelevanceEnvironmental
Locus Tag PrefixTHAOC
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)21620
WGS master1
Genomic DNA1
SRA Experiments3
Protein Sequences34642
Publications
PubMed2
PMC2
Other datasets
BioSample3
Assembly1
Assembly details:
AssemblyLevelWGSChrsBioSampleTaxonomy
GCA_000296195.2ContigAGNL00000000
1
SAMN02981384
Thalassiosira oceanica
SRA Data Details
ParameterValue
Data volume, Gbases1
Data volume, Mbytes2221
Related RefSeq Project
PRJNA62983 : Thalassiosira oceanica CCMP1005

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