marine sediment metagenome (ID 489438) - BioProject

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Accession: PRJNA489438 ID: 489438

marine sediment metagenome

Microbial diversity in the oligotrophic subseafloor sediments beneath North Pond, IODP 336

This project aims to understand the diversity and ecophysiology of microbes especially those involved in the nitrogen cycling in oligotrophic subseafloor sediments, by integrating geochemical measurements and modeling, amplicon sequencing, and quantification of functional genes.

Accession	PRJNA489438
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	marine sediment metagenome[Taxonomy ID: 412755] unclassified sequences; metagenomes; ecological metagenomes; marine sediment metagenome
Submission	Registration date: 22-Dec-2020 University of Bergen
Related Resources	Description of the IODP expedition 336
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1785
WGS master	9
SRA Experiments	47
Protein Sequences	8117
Other datasets
BioSample	52
Assembly	9

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

6
3
9

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_016838825.1	JAEHKU000000000	SAMN16755303	NPMR_NP_iota_1	Nitrosopumilales archaeon
GCA_016838785.1	JAEHKR000000000	SAMN16755300	NPMR_NP_theta_3	Nitrosopumilales archaeon
GCA_016838795.1	JAEHKQ000000000	SAMN16755299	NPMR_NP_theta_2	Nitrosopumilales archaeon
GCA_016838765.1	JAEHKS000000000	SAMN16755301	NPMR_NP_theta_4	Nitrosopumilales archaeon
GCA_016838745.1	JAEHKT000000000	SAMN16755302	NPMR_NP_theta_5	Nitrosopumilales archaeon
GCA_016838725.1	JAEHKP000000000	SAMN16755296	NPMR_NP_delta_2	Nitrosopumilales archaeon
GCA_016276965.1	JADNRU000000000	SAMN16746859	NPMR_NP_delta_1	Nitrosopumilales archaeon
GCA_018609195.1	JAHCSE000000000	SAMN19228957	Bin_194	Patescibacteria group bacterium
GCA_018609185.1	JAHCSD000000000	SAMN19228644	Bin_050	Patescibacteria group bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	51
Data volume, Mbytes	27666

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marine sediment metagenome

Microbial diversity in the oligotrophic subseafloor sediments beneath North Pond, IODP 336

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