compost metagenome (ID 317502) - BioProject

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Accession: PRJNA317502 ID: 317502

compost metagenome

Microbial diversity studies in the Sao Paulo Zoo Composting operation

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This project is a component of the Microbial diversity studies of the Sao Paulo Zoo composting process

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9 additional projects are components of the Microbial diversity studies of the Sao Paulo Zoo composting process.

We aim to understand microbial diversity in composting processes ZC4 (Zoo Composter number 4) from Sao Paulo Zoo

Accession	PRJNA317502
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	compost metagenome[Taxonomy ID: 702656] unclassified sequences; metagenomes; ecological metagenomes; compost metagenome
Publications	Martins LF et al., "Metagenomic analysis of a tropical composting operation at the são paulo zoo park reveals diversity of biomass degradation functions and organisms.", PLoS One, 2013;8(4):e61928
Submission	Registration date: 21-Nov-2016 Instituto de Quimica
Relevance	Industrial

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	21185
WGS master	51
Protein Sequences	102826
Publications
PubMed	1
PMC	1
Other datasets
BioSample	52
Assembly	51

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

51
51

Assembly	WGS	BioSample	Infraspecies Id	Taxonomy
GCA_017577575.1	PKRG00000000	SAMN08227020	Unknown	Acidimicrobiia bacterium
GCA_003242705.1	QGVF00000000	SAMN09092794	-	Acidobacteriota bacterium
GCA_017578025.1	PKQT00000000	SAMN08227007	Unknown	Actinomycetales bacterium
GCA_003242605.1	QGUZ00000000	SAMN09092800	-	Actinomycetota bacterium
GCA_003242515.1	QGUS00000000	SAMN09092807	-	Actinomycetota bacterium
GCA_003242455.1	QGUM00000000	SAMN09092813	-	Actinomycetota bacterium
GCA_003242335.1	QGUG00000000	SAMN09092819	-	Actinomycetota bacterium
GCA_017577865.1	PKQW00000000	SAMN08227010	Unknown	Bacillaceae bacterium
GCA_001884825.1	LWLU00000000	SAMN04867919	G1	Bacillaceae bacterium G1
GCA_017577605.1	PKRF00000000	SAMN08227019	Unknown	Bacilli bacterium
GCA_017577755.1	PKRA00000000	SAMN08227014	Unknown	Bacillota bacterium
GCA_017577665.1	PKRB00000000	SAMN08227015	Unknown	Bacillota bacterium
GCA_017577485.1	PKRI00000000	SAMN08227022	Unknown	Bacillota bacterium
GCA_017577845.1	PKQX00000000	SAMN08227011	Unknown	Bacillota bacterium
GCA_017578085.1	PKQR00000000	SAMN08227005	Unknown	Bacillota bacterium
GCA_017577945.1	PKQS00000000	SAMN08227006	Unknown	Bacillota bacterium
GCA_017577925.1	PKQU00000000	SAMN08227008	Unknown	Bacillota bacterium
GCA_017577895.1	PKQY00000000	SAMN08227012	Unknown	Bacillota bacterium
GCA_003242385.1	QGUJ00000000	SAMN09092816	-	Bacillota bacterium
GCA_003242255.1	QGUT00000000	SAMN09092806	-	Bacillota bacterium
GCA_003242195.1	QGUQ00000000	SAMN09092809	-	Bacillota bacterium
GCA_003242505.1	QGUP00000000	SAMN09092810	-	Bacillota bacterium
GCA_003242675.1	QGVE00000000	SAMN09092795	-	Bacillota bacterium
GCA_003242315.1	QGUY00000000	SAMN09092801	-	Bacteroidota bacterium
GCA_003242265.1	QGUV00000000	SAMN09092804	-	Caldicoprobacter oshimai
GCA_003242165.1	QGUF00000000	SAMN09092820	-	Chloroflexota bacterium
GCA_003242205.1	QGUR00000000	SAMN09092808	-	Chloroflexota bacterium
GCA_017577715.1	PKRC00000000	SAMN08227016	Unknown	Clostridia bacterium
GCA_017577825.1	PKQZ00000000	SAMN08227013	Unknown	Gammaproteobacteria bacterium
GCA_017577365.1	PKRJ00000000	SAMN08227023	Unknown	Gammaproteobacteria bacterium
GCA_017577615.1	PKRE00000000	SAMN08227018	Unknown	Gammaproteobacteria bacterium
GCA_017577885.1	PKQV00000000	SAMN08227009	Unknown	Lysobacteraceae bacterium
GCA_003242395.1	QGUK00000000	SAMN09092815	-	Mycolicibacterium hassiacum
GCA_003242275.1	QGUX00000000	SAMN09092802	-	Pseudomonadota bacterium
GCA_003242685.1	QGVD00000000	SAMN09092796	-	Pseudomonadota bacterium
GCA_003242355.1	QGUH00000000	SAMN09092818	-	Pseudomonadota bacterium
GCA_003242475.1	QGUN00000000	SAMN09092812	-	Pseudomonadota bacterium
GCA_003242585.1	QGVA00000000	SAMN09092799	-	Pseudomonadota bacterium
GCA_003242525.1	QGUU00000000	SAMN09092805	-	Pseudomonadota bacterium
GCA_003242645.1	QGVC00000000	SAMN09092797	-	Pseudomonadota bacterium
GCA_003242575.1	QGUW00000000	SAMN09092803	-	Pseudomonadota bacterium
GCA_003242495.1	QGUO00000000	SAMN09092811	-	Pseudomonadota bacterium
GCA_003242425.1	QGUL00000000	SAMN09092814	-	Pseudomonadota bacterium
GCA_017577685.1	PKRD00000000	SAMN08227017	Unknown	Rhodothermus marinus
GCA_003242625.1	QGVB00000000	SAMN09092798	-	Sphaerobacter thermophilus
GCA_002128215.1	LWLV00000000	SAMN04867920	G2	Symbiobacterium thermophilum
GCA_017577565.1	PKRH00000000	SAMN08227021	Unknown	Thermoanaerobacterales bacterium
GCA_003242745.1	QGVG00000000	SAMN09092793	-	Thermobifida fusca
GCA_003242185.1	QGUI00000000	SAMN09092817	-	Thermocrispum agreste
GCA_003242325.1	QGUE00000000	SAMN09092821	-	[Clostridium] cellulosi
GCA_003242735.1	QGVH00000000	SAMN09092792	-	bacterium

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compost metagenome

Microbial diversity studies in the Sao Paulo Zoo Composting operation

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