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Accession: PRJNA11785 ID: 11785

Mus musculus strain:129X1/SvJ; 129S1/SvImJ; DBA/2J; A/J (house mouse)

Celera Genomics used whole genome shotgun sequencing to sequence the mouse genome

See Genome Information for Mus musculus
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This project is a component of the Chimpanzee gene sequences were used in comparative genomics experiments with mouse and human
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67179 additional projects are related by organism.
2 additional projects are components of the Chimpanzee gene sequences were used in comparative genomics experiments with mouse and human.

The Mus musculus genome was sequenced and annotated by Celera Genomics to study the evolution of different mammalian species. More...

AccessionPRJNA11785
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismMus musculus[Taxonomy ID: 10090]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
PublicationsMural RJ et al., "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome.", Science, 2002 May 31;296(5573):1661-71
SubmissionRegistration date: 7-Jul-2005
Celera Genomics
Related Resources
Locus Tag PrefixMCG
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)46508
WGS master1
SRA Experiments538
Capillary Traces (Trace Archive)1
Protein Sequences45437
Publications
PubMed1
Other datasets
BioSample5
Assembly1
Assembly details:
AssemblyLevelWGSChrsBioSampleTaxonomy
GCA_000002165.1ChromosomeAAHY00000000
21
SAMN03004379
Mus musculus
SRA Data Details
ParameterValue
Data volume, Gbases22
Data volume, Tbytes0.54

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  • Mus musculus strain:129X1/SvJ; 129S1/SvImJ; DBA/2J; A/J
    Mus musculus strain:129X1/SvJ; 129S1/SvImJ; DBA/2J; A/J
    Celera Genomics used whole genome shotgun sequencing to sequence the mouse genome
    BioProject
  • BioProject Links for Nucleotide (Select 74140699) (1)
    BioProject
  • PubChem Same Compounds for PubChem Substance (Select 134221965) (1)
    PubChem Compound
  • Mixture/Component Compounds for PubChem Compound (Select 31289) (169)
    PubChem Compound
  • Bos taurus tRNA-Phe, 12S ribosomal RNA, tRNA-Val, 16S ribosomal RNA, and tRNA-Le...
    Bos taurus tRNA-Phe, 12S ribosomal RNA, tRNA-Val, 16S ribosomal RNA, and tRNA-Leu genes, complete sequence; NADH dehydrogenase subunit 1 (ND1) gene, complete cds; tRNA-Ile, tRNA-Gln, and tRNA-Met genes, complete sequence; NADH dehydrogenase subunit 2 (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and tRNA-Tyr genes, complete sequence; cytochrome c oxidase subunit I (COX1) gene, complete cds; tRNA-Ser and tRNA-Asp genes, complete sequence; cytochrome c oxidase subunit II (COX2) gene, complete cds; tRNA-Lys gene, complete sequence; ATP synthase F0 subunit 8 (ATP8), ATP synthase F0 subunit 6 (ATP6), and cytochrome c oxidase subunit III (COX3) genes, complete cds; tRNA-Gly gene, complete sequence; NADH dehydrogenase subunit 3 (ND3) gene, complete cds; tRNA-Arg gene, complete sequence; NADH dehydrogenase subunit 4L (ND4L) and NADH dehydrogenase subunit 4 (ND4) genes, complete cds; tRNA-His, tRNA-Ser, and tRNA-Leu genes, complete sequence; NADH dehydrogenase subunit 5 (ND5) and NADH dehydrogenase subunit 6 (ND6) genes, complete cds; tRNA-Glu gene, complete sequence; cytochrome b (CYTB) gene, complete cds; and tRNA-Thr and tRNA-Pro genes, complete sequence; mitochondrial.
    PopSet: 2698116887
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