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45076_G02

Organism name:
Sphingobacterium thalpophilum (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC11429
BioSample:
SAMEA3643323
BioProject:
PRJEB6403
Submitter:
SC
Date:
2019/05/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_901482695.1 (latest)
RefSeq assembly accession:
GCF_901482695.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
100x

IDs: 3158171 [UID] 10611728 [GenBank] 10706568 [RefSeq]

See Genome Information for Sphingobacterium thalpophilum

There are 45 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/24/2023 11:46:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,083
CDSs (total)::4,978
Genes (coding)::4,958
CDSs (with protein)::4,958
Genes (RNA)::105
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::81
ncRNAs::3
Pseudo Genes (total)::20
CDSs (without protein)::20
Pseudo Genes (ambiguous residues)::0 of 20
Pseudo Genes (frameshifted)::4 of 20
Pseudo Genes (incomplete)::16 of 20
Pseudo Genes (internal stop)::4 of 20
Pseudo Genes (multiple problems)::3 of 20
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,962,893
Total ungapped length5,962,893
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_901482694.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome LR590484.1=NZ_LR590484.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,962,893

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sphingobacterium thalpophilumSphingobacterium thalpophilum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000686625.1Sphingobacterium thalpophilum DSM 11723type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000686625.1Sphingobacterium thalpophilumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.9699.97
Best-match type99.9998.9699.97

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna