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Pm_UMD_F

Organism name:
Pelmatolapia mariae (spotted tilapia)
Isolate:
MD_Pm_ZW
Sex:
female
BioSample:
SAMN37931306
BioProject:
PRJNA1031194
Submitter:
University of Maryland
Date:
2024/01/31
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_036321145.1 (replaced)
RefSeq assembly accession:
GCF_036321145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAWPEK01
Assembly method:
hifiasm v. 1
Expected final version:
yes
Reference guided assembly:
GCF_013358895.1
Genome coverage:
75x

IDs: 21207591 [UID] 53370238 [GenBank] 54042738 [RefSeq]

See Genome Information for Pelmatolapia mariae

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length940,981,472
Total ungapped length940,980,322
Gaps between scaffolds0
Number of scaffolds792
Scaffold N5042,111,825
Scaffold L508
Number of contigs815
Contig N5031,702,408
Contig L5012
Total number of chromosomes and plasmids20
Number of component sequences (WGS or clone)792

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_036321155.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1CM070156.1=NC_086227.10
Linkage Group LG2CM070157.1=NC_086228.10
Linkage Group LG3_WCM070158.1=NC_086229.10
Linkage Group LG4CM070159.1=NC_086230.10
Linkage Group LG5CM070160.1=NC_086231.10
Linkage Group LG6CM070161.1=NC_086232.10
Linkage Group LG7CM070162.1=NC_086233.10
Linkage Group LG8CM070163.1=NC_086234.10
Linkage Group LG9CM070164.1=NC_086235.10
Linkage Group LG10_11CM070165.1=NC_086236.10
Linkage Group LG12CM070166.1=NC_086237.10
Linkage Group LG13CM070167.1=NC_086238.10
Linkage Group LG14CM070168.1=NC_086239.10
Linkage Group LG15CM070169.1=NC_086240.10
Linkage Group LG16_19CM070170.1=NC_086241.10
Linkage Group LG17CM070171.1=NC_086242.10
Linkage Group LG18CM070172.1=NC_086243.10
Linkage Group LG20CM070173.1=NC_086244.10
Linkage Group LG22CM070174.1=NC_086245.10
Linkage Group LG23CM070175.1=NC_086246.10
unplacedn/an/an/a772

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All940,981,472792940,980,32242,111,825230
Linkage Group LG141,562,973141,562,97341,562,97300
Linkage Group LG238,793,564138,793,46438,793,56420
Linkage Group LG3_W94,765,109194,764,80994,765,10960
Linkage Group LG436,658,377136,658,37736,658,37700
Linkage Group LG539,037,664139,037,61439,037,66410
Linkage Group LG644,866,006144,865,90644,866,00620
Linkage Group LG764,578,926164,578,82664,578,92620
Linkage Group LG831,702,408131,702,40831,702,40800
Linkage Group LG938,933,434138,933,43438,933,43400
Linkage Group LG10_1175,514,252175,514,05275,514,25240
Linkage Group LG1238,061,289138,061,23938,061,28910
Linkage Group LG1337,533,227137,533,22737,533,22700
Linkage Group LG1441,036,422141,036,37241,036,42210
Linkage Group LG1542,111,825142,111,77542,111,82510
Linkage Group LG16_1970,166,723170,166,67370,166,72310
Linkage Group LG1740,386,546140,386,54640,386,54600
Linkage Group LG1837,703,026137,702,97637,703,02610
Linkage Group LG2044,633,640144,633,59044,633,64010
Linkage Group LG224,658,19514,658,1954,658,19500
Linkage Group LG2351,413,955151,413,95551,413,95500
unplaced26,863,91177226,863,91135,99900