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mLepEur2.pri

mLepTim1.pri

Organism name:
Lepus europaeus (European hare)
Isolate:
LE1
Sex:
male
BioSample:
SAMN33984520
BioProject:
PRJNA1009711
Submitter:
University of Eastern Finland
Date:
2023/10/31
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_033115175.1 (latest)
RefSeq assembly accession:
GCF_033115175.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAVHNT01
Assembly method:
HiFiasm v. 07-2023
Expected final version:
yes
Genome coverage:
25x
Sequencing technology:
PacBio RSII
Linked assembly:
GCA_033115075.1 (alternate pseudohaplotype of diploid)

IDs: 19466941 [UID] 49490778 [GenBank] 51980258 [RefSeq]

See Genome Information for Lepus europaeus

Pathogen Detection Resources

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,930,972,321
Total ungapped length2,930,889,363
Gaps between scaffolds0
Number of scaffolds651
Scaffold N50125,776,599
Scaffold L5010
Number of contigs1,069
Contig N5043,409,466
Contig L5021
Total number of chromosomes and plasmids26
Number of component sequences (WGS or clone)651

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_033115585.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM065551.1=NC_084827.10
Chromosome 2CM065552.1=NC_084828.10
Chromosome 3CM065553.1=NC_084829.11
Chromosome 4CM065554.1=NC_084830.10
Chromosome 5CM065555.1=NC_084831.11
Chromosome 6CM065556.1=NC_084832.10
Chromosome 7CM065557.1=NC_084833.10
Chromosome 8CM065558.1=NC_084834.10
Chromosome 9CM065559.1=NC_084835.10
Chromosome 10CM065560.1=NC_084836.10
Chromosome 11CM065561.1=NC_084837.10
Chromosome 12CM065562.1=NC_084838.12
Chromosome 13CM065563.1=NC_084839.10
Chromosome 14CM065564.1=NC_084840.10
Chromosome 15CM065565.1=NC_084841.10
Chromosome 16CM065566.1=NC_084842.10
Chromosome 17CM065567.1=NC_084843.10
Chromosome 18CM065568.1=NC_084844.10
Chromosome 19CM065569.1=NC_084845.10
Chromosome 20CM065570.1=NC_084846.12
Chromosome 21CM065571.1=NC_084847.110
Chromosome 22CM065572.1=NC_084848.10
Chromosome 23CM065573.1=NC_084849.13
Chromosome XCM065574.1=NC_084850.10
Chromosome YCM065575.1=NC_084851.10
unplacedn/an/an/a606

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,930,954,5876502,930,871,629125,776,5994180
Chromosome 1Assembled molecule184,151,5851184,150,785184,151,58540
Chromosome 2Assembled molecule176,467,6981176,466,498176,467,69860
Chromosome 3AllAssembled moleculeUnlocalized scaffolds170,287,607169,342,607945,000211170,285,807169,340,807945,000169,342,607169,342,607945,000990000
Chromosome 4Assembled molecule166,606,2081166,604,608166,606,20880
Chromosome 5AllAssembled moleculeUnlocalized scaffolds159,487,384159,335,674151,710211159,485,153159,333,443151,710159,335,674159,335,674151,71012120000
Chromosome 6Assembled molecule132,443,8311132,441,631132,443,831110
Chromosome 7Assembled molecule132,293,2781132,291,278132,293,278100
Chromosome 8Assembled molecule130,587,5431130,585,304130,587,543120
Chromosome 9Assembled molecule125,776,5991125,774,999125,776,59980
Chromosome 10Assembled molecule125,704,4181125,701,418125,704,418150
Chromosome 11Assembled molecule117,559,5611117,558,161117,559,56170
Chromosome 12AllAssembled moleculeUnlocalized scaffolds106,582,088105,667,338914,750312106,579,688105,664,938914,750105,667,338105,667,338470,90012120000
Chromosome 13Assembled molecule100,925,8661100,925,466100,925,86620
Chromosome 14Assembled molecule99,301,477199,299,47799,301,477100
Chromosome 15Assembled molecule95,895,056195,893,25695,895,05690
Chromosome 16Assembled molecule91,637,918191,636,47291,637,91880
Chromosome 17Assembled molecule84,898,765184,898,16584,898,76530
Chromosome 18Assembled molecule77,563,730177,560,73077,563,730150
Chromosome 19Assembled molecule72,700,603172,698,60372,700,603100
Chromosome 20AllAssembled moleculeUnlocalized scaffolds69,619,45369,331,453288,00031269,616,85369,328,853288,00069,331,45369,331,453179,00013130000
Chromosome 21AllAssembled moleculeUnlocalized scaffolds65,329,76660,609,7104,720,0561111065,322,76660,602,7104,720,05660,609,71060,609,7101,008,73135350000
Chromosome 22Assembled molecule44,025,767144,024,76744,025,76750
Chromosome 23AllAssembled moleculeUnlocalized scaffolds31,954,09430,716,4981,237,59641331,951,69430,714,2981,237,39630,716,49830,716,498952,59612111000
Chromosome XAssembled molecule135,183,1921135,175,992135,183,192360
Chromosome YAssembled molecule33,560,193133,552,99333,560,193360
unplacedAssembled molecule200,410,907606200,389,0651,407,1141100
MoleculeTotal
Length
Mitochondrion MT17,734