U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



bVidCha1 merged haplotype

Organism name:
Vidua chalybeata (birds)
Isolate:
OUT-0048
Sex:
female
BioSample:
SAMN12254000
BioProject:
PRJNA889055
Submitter:
Vertebrate Genomes Project
Date:
2022/12/21
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_026979565.1 (latest)
RefSeq assembly accession:
GCF_026979565.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAPVQZ01
Assembly method:
canu v. 2.1; merfin v. 1.0; purgedups v. 1.2.5; salsa v. 2.2
Expected final version:
yes
Genome coverage:
55.0x
Sequencing technology:
PacBio Sequel II HiFi; Illumina

IDs: 15030201 [UID] 38796158 [GenBank] 41135698 [RefSeq]

See Genome Information for Vidua chalybeata

Pathogen Detection Resources

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,080,440,577
Total ungapped length1,080,275,046
Gaps between scaffolds0
Number of scaffolds177
Scaffold N5072,553,174
Scaffold L506
Number of contigs635
Contig N5015,819,291
Contig L5021
Total number of chromosomes and plasmids41
Number of component sequences (WGS or clone)177

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_026979575.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM049526.1=NC_071530.12
Chromosome 2CM049527.1=NC_071531.10
Chromosome 3CM049528.1=NC_071532.11
Chromosome 4CM049529.1=NC_071533.10
Chromosome 5CM049530.1=NC_071534.10
Chromosome 6CM049531.1=NC_071535.10
Chromosome 7CM049532.1=NC_071536.10
Chromosome 8CM049533.1=NC_071537.10
Chromosome 9CM049534.1=NC_071538.10
Chromosome 10CM049535.1=NC_071539.10
Chromosome 11CM049536.1=NC_071540.10
Chromosome 12CM049537.1=NC_071541.10
Chromosome 13CM049538.1=NC_071542.10
Chromosome 14CM049539.1=NC_071543.10
Chromosome 15CM049540.1=NC_071544.10
Chromosome 16CM049541.1=NC_071545.10
Chromosome 17CM049542.1=NC_071546.10
Chromosome 18CM049543.1=NC_071547.11
Chromosome 19CM049544.1=NC_071548.10
Chromosome 20CM049545.1=NC_071549.10
Chromosome 21CM049546.1=NC_071550.10
Chromosome 22CM049547.1=NC_071551.10
Chromosome 23CM049548.1=NC_071552.10
Chromosome 24CM049549.1=NC_071553.10
Chromosome 25CM049550.1=NC_071554.10
Chromosome 26CM049551.1=NC_071555.10
Chromosome 27CM049552.1=NC_071556.10
Chromosome 28CM049553.1=NC_071557.10
Chromosome 29CM049554.1=NC_071558.10
Chromosome 30CM049555.1=NC_071559.10
Chromosome 31CM049556.1=NC_071560.14
Chromosome 32CM049557.1=NC_071561.14
Chromosome 33CM049558.1=NC_071562.13
Chromosome 34CM049559.1=NC_071563.12
Chromosome 35CM049560.1=NC_071564.13
Chromosome 36CM049561.1=NC_071565.14
Chromosome 37CM049562.1=NC_071566.18
Chromosome 38CM049563.1=NC_071567.13
Chromosome 39CM049564.1=NC_071568.16
Chromosome WCM049565.1=NC_071569.125
Chromosome ZCM049566.1=NC_071570.10
unplacedn/an/an/a70

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,080,440,5771771,080,275,04672,553,1744580
Chromosome 1AllAssembled moleculeUnlocalized scaffolds153,643,662153,566,14477,518312153,635,874153,558,35677,518153,566,144153,566,14455,54327270000
Chromosome 2Assembled molecule116,627,4161116,621,418116,627,416210
Chromosome 3AllAssembled moleculeUnlocalized scaffolds113,875,172113,813,77361,399211113,866,182113,805,28060,902113,813,773113,813,77361,39930291000
Chromosome 4Assembled molecule73,120,142173,116,04473,120,142130
Chromosome 5Assembled molecule72,553,174172,551,07472,553,17460
Chromosome 6Assembled molecule63,029,866163,027,66663,029,86680
Chromosome 7Assembled molecule39,295,975139,290,48039,295,975140
Chromosome 8Assembled molecule36,734,625136,731,32536,734,625120
Chromosome 9Assembled molecule31,471,238131,470,63831,471,23830
Chromosome 10Assembled molecule26,196,388126,194,48826,196,38880
Chromosome 11Assembled molecule21,607,583121,606,48321,607,58340
Chromosome 12Assembled molecule21,230,624121,228,92421,230,62440
Chromosome 13Assembled molecule21,020,439121,017,84121,020,43970
Chromosome 14Assembled molecule20,102,314120,101,02120,102,31450
Chromosome 15Assembled molecule18,751,433118,749,73318,751,43340
Chromosome 16Assembled molecule16,692,534116,691,53616,692,53420
Chromosome 17Assembled molecule15,238,156115,232,25615,238,156130
Chromosome 18AllAssembled moleculeUnlocalized scaffolds14,540,13614,509,98930,14721114,538,13914,507,99230,14714,509,98914,509,98930,147440000
Chromosome 19Assembled molecule12,625,712112,623,31412,625,71290
Chromosome 20Assembled molecule11,446,010111,444,41111,446,01050
Chromosome 21Assembled molecule11,420,481111,418,08111,420,48160
Chromosome 22Assembled molecule8,292,05318,289,1578,292,05370
Chromosome 23Assembled molecule7,564,87017,563,2707,564,87050
Chromosome 24Assembled molecule7,158,53217,153,1367,158,532120
Chromosome 25Assembled molecule7,039,38017,035,4847,039,38090
Chromosome 26Assembled molecule6,149,73116,145,9356,149,731100
Chromosome 27Assembled molecule6,013,10016,009,7056,013,10080
Chromosome 28Assembled molecule5,438,57915,435,3795,438,579100
Chromosome 29Assembled molecule3,416,58313,410,5863,416,583120
Chromosome 30Assembled molecule3,176,31313,170,4183,176,313190
Chromosome 31AllAssembled moleculeUnlocalized scaffolds2,053,5171,963,21890,2995142,050,6181,960,31990,2991,963,2181,963,21825,111770000
Chromosome 32AllAssembled moleculeUnlocalized scaffolds1,816,5251,735,07381,4525141,811,7341,730,28281,4521,735,0731,735,07321,02915150000
Chromosome 33AllAssembled moleculeUnlocalized scaffolds1,735,7531,268,393467,3604131,731,7561,266,394465,3621,268,3931,268,393341,4681174000
Chromosome 34AllAssembled moleculeUnlocalized scaffolds1,027,879994,94032,9393121,023,980991,04132,939994,940994,94024,316990000
Chromosome 35AllAssembled moleculeUnlocalized scaffolds1,017,445702,804314,6414131,010,951698,806312,145702,804702,804171,55616115000
Chromosome 36AllAssembled moleculeUnlocalized scaffolds920,751375,762544,989514915,558373,562541,996220,503375,762207,1021156000
Chromosome 37AllAssembled moleculeUnlocalized scaffolds795,630273,589522,041918795,130273,589521,541132,545273,589108,476101000
Chromosome 38AllAssembled moleculeUnlocalized scaffolds543,275237,691305,584413540,588236,000304,588231,012237,691231,012642000
Chromosome 39AllAssembled moleculeUnlocalized scaffolds529,564230,807298,757716526,672229,411297,261149,554230,807149,554743000
Chromosome WAllAssembled moleculeUnlocalized scaffolds21,533,4153,371,56018,161,8552612521,525,2353,369,06618,156,1691,305,1983,371,5601,220,71917512000
Chromosome ZAssembled molecule76,199,654176,180,87776,199,654550
unplacedAssembled molecule6,794,948706,791,949224,34260