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Source database (GenBank or RefSeq) File type

NDDB_DH_1

Organism name:

Bubalus bubalis (water buffalo)

Infraspecific name:

Breed: Murrah

Isolate:

160015118507

Sex:

female

BioSample:

SAMN11104991

BioProject:

PRJNA542055

Submitter:

National Dairy Development Board, India

Date:

2021/09/10

Assembly type:

alternate-pseudohaplotype

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_019923925.1 (latest)

RefSeq assembly accession:

GCF_019923925.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

VDCC01

Assembly method:

Falcon+Scaff10X+BioNano v. 2019-02-24

Expected final version:

Genome coverage:

572.0x

Sequencing technology:

PacBio Sequel; 10X and BioNano Optical Map

Linked assembly:

GCA_019923935.1 (principal pseudohaplotype of diploid)

IDs: 10872141 [UID] 28791528 [GenBank] 29724588 [RefSeq]

See Genome Information for Bubalus bubalis

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_019923925.1	≠	GCF_019923925.1	NDDB_DH_1	Chromosome	Latest GenBank, RefSeq suppressed

Comment

Global statistics

Total sequence length	2,612,882,031
Total ungapped length	2,612,761,231
Gaps between scaffolds	0
Number of scaffolds	33
Scaffold N50	117,225,556
Scaffold L50	9
Number of contigs	1,241
Contig N50	5,359,742
Contig L50	146
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	33

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM034246.1	=	NC_058343.1	0
Chromosome 2	CM034247.1	=	NC_058344.1	0
Chromosome 3	CM034248.1	=	NC_058345.1	0
Chromosome 4	CM034249.1	=	NC_058346.1	0
Chromosome 5	CM034250.1	=	NC_058347.1	0
Chromosome 6	CM034251.1	=	NC_058348.1	0
Chromosome 7	CM034252.1	=	NC_058349.1	0
Chromosome 8	CM034253.1	=	NC_058350.1	0
Chromosome 9	CM034254.1	=	NC_058351.1	0
Chromosome 10	CM034255.1	=	NC_058352.1	0
Chromosome 11	CM034256.1	=	NC_058353.1	0
Chromosome 12	CM034257.1	=	NC_058354.1	0
Chromosome 13	CM034258.1	=	NC_058355.1	0
Chromosome 14	CM034259.1	=	NC_058356.1	0
Chromosome 15	CM034260.1	=	NC_058357.1	0
Chromosome 16	CM034261.1	=	NC_058358.1	0
Chromosome 17	CM034262.1	=	NC_058359.1	0
Chromosome 18	CM034263.1	=	NC_058360.1	0
Chromosome 19	CM034264.1	=	NC_058361.1	0
Chromosome 20	CM034265.1	=	NC_058362.1	0
Chromosome 21	CM034266.1	=	NC_058363.1	0
Chromosome 22	CM034267.1	=	NC_058364.1	0
Chromosome 23	CM034268.1	=	NC_058365.1	0
Chromosome 24	CM034269.1	=	NC_058366.1	0
Chromosome X	CM034270.1	=	NC_058367.1	0
unplaced	n/a	n/a	n/a	8

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,612,882,031	33	2,612,761,231	117,225,556	1,208
Chromosome 1	201,092,080	1	201,085,780	201,092,080	63
Chromosome 2	187,039,408	1	187,031,708	187,039,408	77
Chromosome 3	174,306,610	1	174,296,610	174,306,610	100
Chromosome 4	163,469,238	1	163,461,038	163,469,238	82
Chromosome 5	130,716,824	1	130,706,824	130,716,824	100
Chromosome 6	119,512,104	1	119,505,804	119,512,104	63
Chromosome 7	117,225,556	1	117,221,356	117,225,556	42
Chromosome 8	117,823,309	1	117,818,009	117,823,309	53
Chromosome 9	108,961,973	1	108,955,973	108,961,973	60
Chromosome 10	103,030,911	1	103,025,811	103,030,911	51
Chromosome 11	101,829,418	1	101,825,618	101,829,418	38
Chromosome 12	105,790,746	1	105,786,546	105,790,746	42
Chromosome 13	89,808,424	1	89,802,824	89,808,424	56
Chromosome 14	82,457,993	1	82,454,393	82,457,993	36
Chromosome 15	81,649,599	1	81,646,699	81,649,599	29
Chromosome 16	84,479,270	1	84,476,470	84,479,270	28
Chromosome 17	72,243,125	1	72,239,725	72,243,125	34
Chromosome 18	66,163,332	1	66,160,232	66,163,332	31
Chromosome 19	71,510,497	1	71,508,297	71,510,497	22
Chromosome 20	68,737,861	1	68,735,461	68,737,861	24
Chromosome 21	60,385,250	1	60,382,450	60,385,250	28
Chromosome 22	61,876,990	1	61,874,790	61,876,990	22
Chromosome 23	51,972,974	1	51,971,074	51,972,974	19
Chromosome 24	41,831,910	1	41,830,210	41,831,910	17
Chromosome X	146,936,094	1	146,927,894	146,936,094	82
unplaced	2,030,535	8	2,029,635	269,427	9

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NDDB_DH_1

See Genome Information for Bubalus bubalis

Pathogen Detection Resources

There are 8 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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