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ASM1839893v1

Organism name:
Telmatocola sphagniphila (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SP2T
BioSample:
SAMN19114640
BioProject:
PRJNA729228
Submitter:
Institute of Bioengineering, Research Center of Biotechnology of RAS
Date:
2021/05/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_018398935.1 (latest)
RefSeq assembly accession:
GCF_018398935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye, pilon v. 2.7b
Expected final version:
yes
Genome coverage:
135.0x
Sequencing technology:
Illumina MiSeq; Oxford Nanopore MinION

IDs: 10071721 [UID] 26780178 [GenBank] 26891778 [RefSeq]

See Genome Information for Telmatocola sphagniphila

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/08/2023 03:11:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,253
CDSs (total)::5,199
Genes (coding)::5,168
CDSs (with protein)::5,168
Genes (RNA)::54
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::31
CDSs (without protein)::31
Pseudo Genes (ambiguous residues)::0 of 31
Pseudo Genes (frameshifted)::9 of 31
Pseudo Genes (incomplete)::16 of 31
Pseudo Genes (internal stop)::7 of 31
Pseudo Genes (multiple problems)::1 of 31
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,592,641
Total ungapped length6,592,641
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_018398945.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP074694.1=NZ_CP074694.1

Assembly statistics

MoleculeTotal
Length
Chromosome 6,592,641

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Telmatocola sphagniphilaTelmatocola sphagniphila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000255705.1Zavarzinella formosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.140.120.08

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected