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Source database (GenBank or RefSeq) File type

AALO_Geno_1.1

Organism name:

Alosa alosa (allis shad)

Infraspecific name:

Ecotype: Scorff River

Isolate:

M-15738

Sex:

male

BioSample:

SAMN16418510

BioProject:

PRJNA668689

Submitter:

GenoFish

Date:

2021/03/30

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_017589495.2 (latest)

RefSeq assembly accession:

GCF_017589495.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JADWDJ01

Assembly method:

WTDBG2 v. 2.3; 3D-DNA v. 180114

Expected final version:

yes

Genome coverage:

140.0x

Sequencing technology:

Oxford Nanopore MinION; Oxford Nanopore GridION; Oxford Nanopore PromethION; Illumina HiSeq

IDs: 12703741 [UID] 33220288 [GenBank] 33265228 [RefSeq]

See Genome Information for Alosa alosa

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_017589495.2	≠	GCF_017589495.1	AALO_Geno_1.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_017589495.1	n/a	n/a	AALO_Geno_1.0	Chromosome	Replaced GenBank

Comment

In May 2022 7 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	854,464,681
Total ungapped length	853,697,150
Gaps between scaffolds	0
Number of scaffolds	1,095
Scaffold N50	35,353,468
Scaffold L50	12
Number of contigs	2,631
Contig N50	1,188,980
Contig L50	207
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	1,095

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM030046.1	=	NC_063189.1	0
Chromosome 2	CM030047.1	=	NC_063190.1	0
Chromosome 3	CM030048.1	=	NC_063191.1	0
Chromosome 4	CM030049.1	=	NC_063192.1	0
Chromosome 5	CM030050.1	=	NC_063193.1	0
Chromosome 6	CM030051.1	=	NC_063194.1	0
Chromosome 7	CM030052.1	=	NC_063195.1	0
Chromosome 8	CM030053.1	=	NC_063196.1	0
Chromosome 9	CM030054.1	=	NC_063197.1	0
Chromosome 10	CM030055.1	=	NC_063198.1	0
Chromosome 11	CM030056.1	=	NC_063199.1	0
Chromosome 12	CM030057.1	=	NC_063200.1	0
Chromosome 13	CM030058.1	=	NC_063201.1	0
Chromosome 14	CM030059.1	=	NC_063202.1	0
Chromosome 15	CM030060.1	=	NC_063203.1	0
Chromosome 16	CM030061.1	=	NC_063204.1	0
Chromosome 17	CM030062.1	=	NC_063205.1	0
Chromosome 18	CM030063.1	=	NC_063206.1	0
Chromosome 19	CM030064.1	=	NC_063207.1	0
Chromosome 20	CM030065.1	=	NC_063208.1	0
Chromosome 21	CM030066.1	=	NC_063209.1	0
Chromosome 22	CM030067.1	=	NC_063210.1	0
Chromosome 23	CM030068.1	=	NC_063211.1	0
Chromosome 24	CM030069.1	=	NC_063212.1	0
unplaced	n/a	n/a	n/a	1,070

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	854,447,983	1,094	853,680,452	35,353,468	1,536
Chromosome 1	52,034,231	1	51,991,231	52,034,231	86
Chromosome 2	38,305,147	1	38,274,147	38,305,147	62
Chromosome 3	37,952,636	1	37,906,136	37,952,636	93
Chromosome 4	37,581,503	1	37,554,503	37,581,503	54
Chromosome 5	37,139,344	1	37,102,844	37,139,344	73
Chromosome 6	36,699,402	1	36,666,402	36,699,402	66
Chromosome 7	36,704,817	1	36,642,317	36,704,817	125
Chromosome 8	36,468,539	1	36,442,008	36,468,539	54
Chromosome 9	36,454,493	1	36,428,993	36,454,493	51
Chromosome 10	35,730,257	1	35,709,257	35,730,257	42
Chromosome 11	35,515,461	1	35,488,961	35,515,461	53
Chromosome 12	35,353,468	1	35,320,968	35,353,468	65
Chromosome 13	34,596,323	1	34,569,323	34,596,323	54
Chromosome 14	33,771,868	1	33,752,368	33,771,868	39
Chromosome 15	33,108,655	1	33,083,655	33,108,655	50
Chromosome 16	32,994,496	1	32,969,496	32,994,496	50
Chromosome 17	32,424,829	1	32,401,829	32,424,829	46
Chromosome 18	32,369,890	1	32,350,390	32,369,890	39
Chromosome 19	31,085,579	1	31,065,079	31,085,579	41
Chromosome 20	30,742,155	1	30,724,655	30,742,155	35
Chromosome 21	30,606,742	1	30,579,242	30,606,742	55
Chromosome 22	29,809,500	1	29,779,000	29,809,500	61
Chromosome 23	29,389,277	1	29,373,777	29,389,277	31
Chromosome 24	28,718,654	1	28,682,154	28,718,654	73
unplaced	18,890,717	1,070	18,821,717	23,377	138

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AALO_Geno_1.1

See Genome Information for Alosa alosa

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear