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ASM1731050v1

Organism name:
Methylacidiphilum caldifontis (verrucomicrobia)
Taxonomy check:
OK
Infraspecific name:
Strain: IT6
BioSample:
SAMN17036178
BioProject:
PRJNA683735
Submitter:
Korea Institute of Geoscience and Mineral Resources
Date:
2021/03/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_017310505.1 (latest)
RefSeq assembly accession:
GCF_017310505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
444.0x
Sequencing technology:
PacBio RSII

IDs: 9503731 [UID] 25494818 [GenBank] 25536068 [RefSeq]

See Genome Information for Methylacidiphilum caldifontis

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Chungbuk National University
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/08/2023 11:58:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,071
CDSs (total)::2,019
Genes (coding)::2,003
CDSs (with protein)::2,003
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::16
CDSs (without protein)::16
Pseudo Genes (ambiguous residues)::0 of 16
Pseudo Genes (frameshifted)::12 of 16
Pseudo Genes (incomplete)::5 of 16
Pseudo Genes (internal stop)::3 of 16
Pseudo Genes (multiple problems)::4 of 16
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,254,698
Total ungapped length2,254,698
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_017310515.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP065957.1=NZ_CP065957.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,254,698

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methylacidiphilum caldifontisMethylacidiphilum caldifontis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000019665.1Candidatus Methylacidiphilum infernorumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.4720.9320.64

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected