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ASM651717v1

Organism name:
Persicimonas caeni (d-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: YN101
BioSample:
SAMN12056529
BioProject:
PRJNA548594
Submitter:
Shandong University in Weihai
Date:
2019/06/30
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_006517175.1 (latest)
RefSeq assembly accession:
GCF_006517175.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Link v. v5.0.1
Expected final version:
yes
Genome coverage:
144.4x
Sequencing technology:
PacBio

IDs: 3578481 [UID] 11570798 [GenBank] 11597168 [RefSeq]

See Genome Information for Persicimonas caeni

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Chromosome not circularized
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/01/2023 12:20:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,007
CDSs (total)::5,938
Genes (coding)::5,891
CDSs (with protein)::5,891
Genes (RNA)::69
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::57
ncRNAs::3
Pseudo Genes (total)::47
CDSs (without protein)::47
Pseudo Genes (ambiguous residues)::0 of 47
Pseudo Genes (frameshifted)::2 of 47
Pseudo Genes (incomplete)::46 of 47
Pseudo Genes (internal stop)::1 of 47
Pseudo Genes (multiple problems)::2 of 47
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,047,306
Total ungapped length8,047,206
Gaps between scaffolds0
Number of scaffolds1
Scaffold N508,047,306
Scaffold L501
Number of contigs1
Contig N508,047,206
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_006517185.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP041186.1=NZ_CP041186.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 8,047,30618,047,2068,047,30610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Persicimonas caeniPersicimonas caeni

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_007993775.1Persicimonas caenitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007993775.1Persicimonas caenitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.00100.00100.00
Best-match type100.00100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna